View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15966_low_2 (Length: 491)

Name: NF15966_low_2
Description: NF15966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15966_low_2
NF15966_low_2
[»] chr2 (2 HSPs)
chr2 (8-479)||(15868703-15869173)
chr2 (366-479)||(45197437-45197550)
[»] chr5 (1 HSPs)
chr5 (303-473)||(15161850-15162018)
[»] chr4 (3 HSPs)
chr4 (8-163)||(53075704-53075859)
chr4 (410-459)||(48436968-48437017)
chr4 (377-477)||(53075486-53075586)
[»] chr1 (4 HSPs)
chr1 (12-159)||(1497177-1497324)
chr1 (366-479)||(1462567-1462680)
chr1 (110-159)||(1462287-1462336)
chr1 (418-479)||(1496960-1497021)
[»] chr7 (1 HSPs)
chr7 (414-477)||(48664527-48664590)
[»] chr8 (3 HSPs)
chr8 (413-454)||(9543904-9543945)
chr8 (367-479)||(26790317-26790429)
chr8 (365-453)||(972032-972120)
[»] chr3 (1 HSPs)
chr3 (31-160)||(50275883-50276012)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 479
Target Start/End: Original strand, 15868703 - 15869173
Alignment:
Q  8 tagcaaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttcc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15868703 tagctaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttcc 15868802  T
Q  108 agttgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcatattcttttagcaactaactattctgnnnnnnntttcctttttgc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  15868803 agttgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcatattcttttagcaactaactattctgaaaaaa-tttcctttttgc 15868901  T
Q  208 ttatcctaatgctcttcgaaaaggtgtagttcctatgaagcactgacacatacacgaaaaccagacaagacactttcactgccacatttattctaaagtg 307  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15868902 ttatcctaatgctcttcgaaaaggtgtagttcctatgaagcattgacacatacacgaaaaccagacaagacactttcactgacacatttattctaaagtg 15869001  T
Q  308 ttggtgcaacatagattcttaattatatccttaatatcttagattgtttaatactatacagaacataagtatgaaattgtgaagaaattacaagagagga 407  Q
    | |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869002 tcggtgcaacatagatacttaattatatccttaatatctccgattgtttaatactatacagaacataagtatgaaattgtgaagaaattacaagagagga 15869101  T
Q  408 agcacattgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagccgatattggaattg 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15869102 agcacattgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagccgatattggaattg 15869173  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 366 - 479
Target Start/End: Complemental strand, 45197550 - 45197437
Alignment:
Q  366 cagaacataagtatgaaattgtgaagaaattacaagagaggaagcacattgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagc 465  Q
    |||||||||| ||||| ||||| |||| | | || || ||||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||||||| |||    
T  45197550 cagaacataaatatgagattgtaaagagactccaggataggaaacacatagttgggatgacaggagatggcgtgaatgatgctcctgcattgaaaagagc 45197451  T
Q  466 cgatattggaattg 479  Q
     |||||||||||||    
T  45197450 agatattggaattg 45197437  T

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Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 303 - 473
Target Start/End: Complemental strand, 15162018 - 15161850
Alignment:
Q  303 aagtgttggtgcaacatagattcttaattatatccttaatatcttagattgtttaatactatacagaacataagtatgaaattgtgaagaaattacaaga 402  Q
    |||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15162018 aagtgttggtgcaagatagattcttaattatatccttaatatctcctattgtttaatactatacagaacataagtatgaaattgtgaagaaattacaaga 15161919  T
Q  403 gaggaagcacattgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagccgatattg 473  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  15161918 gaggaagcacattgttggaatgactggagatg--gtgaatgatgctcctgcattgaaaaaagccgatattg 15161850  T

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Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 53075859 - 53075704
Alignment:
Q  8 tagcaaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttcc 107  Q
    ||||||||||||||||  |||||||||| |||||||| ||||||||||||||| | |||||  | |||||||| ||||| |||||| |||| ||||||||    
T  53075859 tagcaaaggagactggccggagacttgggatgggaactaatatgtatccatctgccaccttacttggtcaagacaaagacgcaaatattgccgcacttcc 53075760  T
Q  108 agttgaagagctgattgagaaggcagacggatttgccggagtttttccaggttcat 163  Q
    |||||||||||||||||||||||| || || ||||| ||||| |||||||||||||    
T  53075759 agttgaagagctgattgagaaggctgatgggtttgctggagtatttccaggttcat 53075704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 410 - 459
Target Start/End: Complemental strand, 48437017 - 48436968
Alignment:
Q  410 cacattgttggaatgactggagatggtgtgaatgatgctcctgcattgaa 459  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||| ||||    
T  48437017 cacattgttggtatgactggtgatggtgtgaatgatgcacctgcactgaa 48436968  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 477
Target Start/End: Complemental strand, 53075586 - 53075486
Alignment:
Q  377 tatgaaattgtgaagaaattacaagagaggaagcacattgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagccgatattggaa 476  Q
    ||||||||||| | ||| || ||||| ||||||||||||  ||| ||||| |||||||| || || |||||||| || |||||||  || ||||||||||    
T  53075586 tatgaaattgtaaggaagttgcaagaaaggaagcacatttgtgggatgaccggagatggggtcaacgatgctccagctttgaaaagggctgatattggaa 53075487  T
Q  477 t 477  Q
    |    
T  53075486 t 53075486  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 1497324 - 1497177
Alignment:
Q  12 aaaggagactggtaggagacttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagtt 111  Q
    |||||| |||||||| || ||||| |||||||| || ||||||||||| ||| | ||| | |||||||| |||||| |   | || | || |||||||||    
T  1497324 aaaggaaactggtagaaggcttggaatgggaacaaacatgtatccatcgtctgctttgcttggtcaagacaaagattcttctatttcggctcttccagtt 1497225  T
Q  112 gaagagctgattgagaaggcagacggatttgccggagtttttccaggt 159  Q
    || ||| |||| |||||||| || |||||||| ||||| |||||||||    
T  1497224 gacgagttgatcgagaaggctgatggatttgcaggagtatttccaggt 1497177  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 366 - 479
Target Start/End: Original strand, 1462567 - 1462680
Alignment:
Q  366 cagaacataagtatgaaattgtgaagaaattacaagagaggaagcacattgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagc 465  Q
    ||||||| || ||||||||||| ||||   | |||||||||||||| |||  ||||||||||||||||||||| ||||| || || ||  | || |||||    
T  1462567 cagaacacaaatatgaaattgtcaagaggcttcaagagaggaagcatatttgtggaatgactggagatggtgtaaatgacgccccggcgctaaagaaagc 1462666  T
Q  466 cgatattggaattg 479  Q
     |||||||||||||    
T  1462667 agatattggaattg 1462680  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 1462287 - 1462336
Alignment:
Q  110 ttgaagagctgattgagaaggcagacggatttgccggagtttttccaggt 159  Q
    |||| ||| ||||||||||||| ||||||||||||||||| |||||||||    
T  1462287 ttgacgagttgattgagaaggctgacggatttgccggagtatttccaggt 1462336  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 1497021 - 1496960
Alignment:
Q  418 tggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagccgatattggaattg 479  Q
    ||||||||| ||||||||||| || ||||||||||| || || ||||||||||| |||||||    
T  1497021 tggaatgacaggagatggtgtaaacgatgctcctgcgttaaagaaagccgatatcggaattg 1496960  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 477
Target Start/End: Original strand, 48664527 - 48664590
Alignment:
Q  414 ttgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagccgatattggaat 477  Q
    |||||||||||||||||||||| || |||||||| || |||||||| ||||| || ||||||||    
T  48664527 ttgttggaatgactggagatggagtaaatgatgccccggcattgaagaaagcagacattggaat 48664590  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 9543945 - 9543904
Alignment:
Q  413 attgttggaatgactggagatggtgtgaatgatgctcctgca 454  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  9543945 attgttgcaatgactggagatggtgtgaatgatgcacctgca 9543904  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 367 - 479
Target Start/End: Original strand, 26790317 - 26790429
Alignment:
Q  367 agaacataagtatgaaattgtgaagaaattacaagagaggaagcacattgttggaatgactggagatggtgtgaatgatgctcctgcattgaaaaaagcc 466  Q
    |||||| |||||||||||||| ||||   | ||||| ||||| || ||   ||||||||||||||||||||| || ||||| |||||| | || |||||     
T  26790317 agaacacaagtatgaaattgttaagaggctccaagaaaggaaacatatatgtggaatgactggagatggtgtaaacgatgcacctgcactaaagaaagca 26790416  T
Q  467 gatattggaattg 479  Q
    || ||||||||||    
T  26790417 gacattggaattg 26790429  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 365 - 453
Target Start/End: Complemental strand, 972120 - 972032
Alignment:
Q  365 acagaacataagtatgaaattgtgaagaaattacaagagaggaagcacattgttggaatgactggagatggtgtgaatgatgctcctgc 453  Q
    ||||| || |||||||| ||||||||||  ||||| |  || |||||||||  ||| |||||||| ||||| ||||||||||| |||||    
T  972120 acagagcacaagtatgagattgtgaagaggttacaggctagaaagcacatttgtggcatgactggtgatggagtgaatgatgcacctgc 972032  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 160
Target Start/End: Original strand, 50275883 - 50276012
Alignment:
Q  31 cttggtatgggaaccaatatgtatccatcttctaccttgttgggtcaagataaagatgcaaatgttgctgcacttccagttgaagagctgattgagaagg 130  Q
    ||||| |||||||| || ||||||||||||||| | ||| | ||||||   || |||||   |||| | || ||||||||||| ||| ||||||||||||    
T  50275883 cttggaatgggaacgaacatgtatccatcttcttcattgctcggtcaaagcaaggatgctgctgtttcagctcttccagttgatgagttgattgagaagg 50275982  T
Q  131 cagacggatttgccggagtttttccaggtt 160  Q
    | || |||||||| ||||| ||||| ||||    
T  50275983 ctgatggatttgctggagtgtttcctggtt 50276012  T

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