View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15966_low_4 (Length: 246)
Name: NF15966_low_4
Description: NF15966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15966_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 24058705 - 24058500
Alignment:
| Q |
28 |
caatccagttgatttacaagatcattcccttccaccattgtagcttgcatcgtttggtat-atatggaactctaccacgtccctcacgttgcttatgttg |
126 |
Q |
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| T |
24058705 |
caatccaattgatttacaagatcattcccttccaccattgtagcttgcatcatttaatttgatatggaactccaccacgtccctcacgttgcttatgttg |
24058606 |
T |
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| Q |
127 |
ccattataagagttggtaagacat-tttactatgggaaaattacactaatcactgctcaccgtttatgtgaatatatcacatctccactctattttataa |
225 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24058605 |
ccattataagagttggtaagacatgtttactatgggaaaattacactaatcactgctcaccgtttatgtgaatatatcacatctccactctattttataa |
24058506 |
T |
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| Q |
226 |
ctcaac |
231 |
Q |
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|||||| |
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| T |
24058505 |
ctcaac |
24058500 |
T |
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