View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15967_high_2 (Length: 483)
Name: NF15967_high_2
Description: NF15967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15967_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Original strand, 41655682 - 41656135
Alignment:
| Q |
11 |
agcataggcaaaataggggtaggatgaatggccatgcagtatcacagggaaatactcactctggtacatatatgccacaagcccagcaggcttctcagtc |
110 |
Q |
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| T |
41655682 |
agcataggcaaaataggggtaggatgaatggccatgcagtatcacagggaaatactcactctggtacatatatgccacaagcccagcaggcttctcagtc |
41655781 |
T |
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| Q |
111 |
agcgatctcttcaagagagtcaagtactcagcaggnnnnnnnnnnnnnnnnnnnnnnnncgagccccacttttcacttagagaacatgtaaatgcttatg |
210 |
Q |
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| T |
41655782 |
agcgatctcttcaagagagtcaagtactcagcaggttttttctttctttctttctttctcgagccccacttctcacttatagaacatgtaaatgcttatg |
41655881 |
T |
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| Q |
211 |
cattgcacattctctacacaactatcaggtgtcacagagttcccagtgctacttgtttttctgaacaacactatgccttaaaaataatttgaaactgtgc |
310 |
Q |
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| T |
41655882 |
cgttgcacattctcgacacaactatcaggtgtcacagagttcccagtgctacttgtttttctgaacaacactatgccttaaaaataatttgaaactgtgc |
41655981 |
T |
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| Q |
311 |
ttgaacttcggactagcaaattttgtttagtctttgatataaaatagtgaagatgtttgtattttatttcgaaagttgtgctttaatccctttctataca |
410 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41655982 |
ttgaacttcggactagcaagttttgtttagtctttgatataaaatagtgaagatgtttgtattttatttcgaaacttgtgctttaatccctttctataca |
41656081 |
T |
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| Q |
411 |
tttatttcatacatatttctgttctgttttctcaagtttgtatcatttgcagag |
464 |
Q |
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| T |
41656082 |
tttatttcatacatatttctgttctgttttctcaagttcgtatcatttgcagag |
41656135 |
T |
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