View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15967_high_5 (Length: 431)
Name: NF15967_high_5
Description: NF15967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15967_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 25 - 417
Target Start/End: Complemental strand, 33298731 - 33298339
Alignment:
| Q |
25 |
catactccatgtttggctgatgagaatactgccttcaacacggagataatatcagttttcgttgtgaacattttagttttaattccaaggaaacccttta |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33298731 |
catactccatgtttggctgatgagaatactgccttcaacacggagataatatcagttttcgttgtgaacattttagttttaatgccaaggaaacccttta |
33298632 |
T |
|
| Q |
125 |
gctgttgaagggcaattgttatggcagcaccccccataaaaccaacaatagcagcatgggataggaagtcaaccaagaatcctaatctgattttttgaca |
224 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
33298631 |
gctgttgaagggcaattgtgatagcagcaccccccataaaaccgacaatagcagcatgggataggaagtcaatcaagaaccctaatctgattttttgaca |
33298532 |
T |
|
| Q |
225 |
gaaaaacaaaataaccgattcagttataagatcatcatggtatattaagtagtgtaacattagtagcagctggtagtacatgtatatccggtgtttgcgt |
324 |
Q |
| |
|
||||||||||| |||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
33298531 |
gaaaaacaaaagaaccaatccagttataagaccatcatggtatattaagaagtgtaacattagtagcagctggtagtacatgtatatccggtgtctgggt |
33298432 |
T |
|
| Q |
325 |
tagtgcttcgtatgatatacctgaaaatcccaagagttgcttgtgtaatcccagcnnnnnnngtggctgtaaaagctagacgtcgatattctt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
33298431 |
tagtgcttcgtatgatatacctgaaaatcccaagagttgcttgtgtaatcccagcaaaaaaagtggctgtaaaagccagacgtcgatattctt |
33298339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 25 - 209
Target Start/End: Complemental strand, 25719877 - 25719699
Alignment:
| Q |
25 |
catactccatgtttggctgatgagaatactgccttcaacacggagataatatcagttttcgttgtgaacattttagttttaattccaaggaaacccttta |
124 |
Q |
| |
|
||||||||||| | ||||||||||||||||| |||| ||| || || ||||| |||||| |||||||| ||| | || |||||||||||||| | |
|
|
| T |
25719877 |
catactccatgatgggctgatgagaatactgaattcatcacagatattatatcggttttctttgtgaacttttga------atcccaaggaaacccttaa |
25719784 |
T |
|
| Q |
125 |
gctgttgaagggcaattgttatggcagcaccccccataaaaccaacaatagcagcatgggataggaagtcaaccaagaatcctaa |
209 |
Q |
| |
|
| |||||||| || ||||| |||||||| |||||||||||||| || || |||||||| |||||||| |||| ||| |||||||| |
|
|
| T |
25719783 |
gttgttgaagagctattgtgatggcagctccccccataaaaccgactattgcagcatgtgataggaaatcaatcaaaaatcctaa |
25719699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 203
Target Start/End: Complemental strand, 1493370 - 1493294
Alignment:
| Q |
127 |
tgttgaagggcaattgttatggcagcaccccccataaaaccaacaatagcagcatgggataggaagtcaaccaagaa |
203 |
Q |
| |
|
||||| || ||||| || |||||||| || ||||| || |||||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
1493370 |
tgttggagtgcaatagtaatggcagctccacccatgaatccaacaatggcagcatgagataggaagtcaatcaagaa |
1493294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University