View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15967_high_6 (Length: 419)
Name: NF15967_high_6
Description: NF15967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15967_high_6 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 5 - 419
Target Start/End: Complemental strand, 14051145 - 14050729
Alignment:
| Q |
5 |
gatttatatgatcttactatccactctcaa--caatttaaaatctttgatcaagaatttttcaagagaggaggcatagaaaatattacctttggcaatgc |
102 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||| || |||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
14051145 |
gatttatatgattttactctccactcccaaaacagtttaaaatatttaatcaagaatttttcaagagagaaggcataaaaaatattacctttggcaatgc |
14051046 |
T |
|
| Q |
103 |
catgaattatggacactctagtagaccattcaagtacctcagcactttctctctgaacatcaagatactttgacaaactcccatttgagacaaaatcata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14051045 |
catgaattatggacactctagtagaccattcaagtacctcagcactttctctctgaacatcaagatactttgacaaacgcccatttgagacaaaatcata |
14050946 |
T |
|
| Q |
203 |
aaccagaaaacattccccgcggcttttcgaacagcaaaagcctctcaaccgaacgagattttcatgctttaacgaagttaatatcttcaaaccattcaag |
302 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14050945 |
aaccagaaaacattcccctcggcttttcgaacagcaaaagcctctcaaccgaacaagattttcgtgctttaacgaagttaatatcttcaaaccattcaag |
14050846 |
T |
|
| Q |
303 |
aattcagtttcgtcagatttgcagcttgttttggcaatgcactttataaccacaatagatccatcttgcaagattcctctatagttagctgaaatattat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
14050845 |
aattcagtttcgtcagatttgcagcttgttttgggaatgcactttataaccacaatagatccatctcgcaagattcctctatagttagatgaaatattat |
14050746 |
T |
|
| Q |
403 |
tcttcgccaataaattc |
419 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14050745 |
tcttcgccaataaattc |
14050729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 5 - 419
Target Start/End: Complemental strand, 14361174 - 14360758
Alignment:
| Q |
5 |
gatttatatgatcttactatccactctcaa--caatttaaaatctttgatcaagaatttttcaagagaggaggcatagaaaatattacctttggcaatgc |
102 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||| || |||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
14361174 |
gatttatatgattttactctccactcccaaaacagtttaaaatatttaatcaagaatttttcaagagagaaggcataaaaaatattacctttggcaatgc |
14361075 |
T |
|
| Q |
103 |
catgaattatggacactctagtagaccattcaagtacctcagcactttctctctgaacatcaagatactttgacaaactcccatttgagacaaaatcata |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14361074 |
catgaattatggacactctagtagaccattcaagtacctcagcactttctctctgaacatcaagatactttgacaaacgcccatttgagacaaaatcata |
14360975 |
T |
|
| Q |
203 |
aaccagaaaacattccccgcggcttttcgaacagcaaaagcctctcaaccgaacgagattttcatgctttaacgaagttaatatcttcaaaccattcaag |
302 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14360974 |
aaccagaaaacattcccctcggcttttcgaacagcaaaagcctctcaaccgaacaagattttcgtgctttaacgaagttaatatcttcaaaccattcaag |
14360875 |
T |
|
| Q |
303 |
aattcagtttcgtcagatttgcagcttgttttggcaatgcactttataaccacaatagatccatcttgcaagattcctctatagttagctgaaatattat |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
14360874 |
aattcagtttcgtcagatttgcagcttgttttgggaatgcactttataaccacaatagatccatctcgcaagattcctctatagttagatgaaatattat |
14360775 |
T |
|
| Q |
403 |
tcttcgccaataaattc |
419 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14360774 |
tcttcgccaataaattc |
14360758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University