View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15967_low_1 (Length: 720)
Name: NF15967_low_1
Description: NF15967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15967_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 318 - 692
Target Start/End: Original strand, 25892032 - 25892404
Alignment:
| Q |
318 |
gtgttcccttcaatccaaagtgaaaaattgatttgttagtgattgttgatcaattcaattcctctttctctgcttaatcattatccaaccagttaataag |
417 |
Q |
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| T |
25892032 |
gtgttcccttcaatccaaagtgaaaaattgatttgttagcgattgttgatcaattcaattcctctttctctgcttaatcattatccaaccagttaataag |
25892131 |
T |
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| Q |
418 |
atcagtatattcttagagatggagtcacacacacaggaataaatatattcctccattcgaagtcttttttgttgtcgagaattatgcttgataaaatctt |
517 |
Q |
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| T |
25892132 |
atcagtatattcttagagatggagtcacacacacaggaataaatgtattcctccattcgaagtctttt--gttgtcgagaattatgcttgataaaatctt |
25892229 |
T |
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| Q |
518 |
tacttggttcatagtcatcatacacattatcctttgatcgaggaagttatgtggcatcctcctctttgctatactactgatcgtactgttggaggccgtc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25892230 |
tacttggttcatagtcatcatacacattatcctttgattgaggaagttatgtggcatcctcctctttgctatactattgatcgtactgttggaggccgtc |
25892329 |
T |
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| Q |
618 |
acagtctttccatttgtggtggtatttttcgagatagtagtgcaactacttttgagtattgtgtggaaaatcttg |
692 |
Q |
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| T |
25892330 |
acagtctttccatttgtggtggtatttttcgagatagtagtgcaactacttttgagtattgtgtggaaaatcttg |
25892404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 73 - 323
Target Start/End: Original strand, 25890651 - 25890901
Alignment:
| Q |
73 |
ttcacatagaagtgactatatttagttctatcttgcaaatgtatgatcatattatcatttatactagaattttaacatatgaattagttttaaccattct |
172 |
Q |
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| T |
25890651 |
ttcacatagaagtgactatatttagttctatcttgcaaatgtatgatcatattatcatttatactacaattttaacatatgagttagttttaaccattct |
25890750 |
T |
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| Q |
173 |
gtttgttcaggtatcaaacaattcatccttcttatcatggataatgcacatttgtaaattggcaccatgaaaaaattaacttttggtcagatgtgtggtt |
272 |
Q |
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| T |
25890751 |
gtttgttcaggtatcaaacaattcatccttcttatcatggataatgcacatttgtaaattggcaccatgaaaaaattaacttttggtcagatgtgtggtt |
25890850 |
T |
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| Q |
273 |
ttgaaagtctaacactagcttggttggcatagttgatagtatcaagtgttc |
323 |
Q |
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| T |
25890851 |
ttgaaagtctaacactagcttggttggcatagttgatagtatcaagtgttc |
25890901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 25887351 - 25887403
Alignment:
| Q |
17 |
cctacatctttgccgaatatgaatcaactctttaccatcaactgaatcaacat |
69 |
Q |
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| T |
25887351 |
cctacatctttgccgaatatgaattaactctttaccaccaactgaatcaacat |
25887403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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