View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15967_low_11 (Length: 221)

Name: NF15967_low_11
Description: NF15967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15967_low_11
NF15967_low_11
[»] chr4 (13 HSPs)
chr4 (18-203)||(3810113-3810298)
chr4 (34-203)||(4218740-4218909)
chr4 (8-203)||(3817681-3817876)
chr4 (27-203)||(3987092-3987268)
chr4 (27-203)||(4010093-4010269)
chr4 (30-203)||(3932834-3933007)
chr4 (34-203)||(3801683-3801852)
chr4 (74-203)||(3919654-3919783)
chr4 (37-201)||(4002398-4002562)
chr4 (94-203)||(4025323-4025432)
chr4 (112-203)||(3954360-3954451)
chr4 (118-167)||(3963218-3963267)
chr4 (118-178)||(4018830-4018890)
[»] scaffold1360 (1 HSPs)
scaffold1360 (30-167)||(1829-1966)
[»] chr5 (1 HSPs)
chr5 (37-196)||(13398054-13398213)
[»] chr8 (1 HSPs)
chr8 (117-167)||(7069135-7069185)
[»] chr2 (1 HSPs)
chr2 (113-155)||(42858991-42859033)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 3810298 - 3810113
Alignment:
Q  18 aagaatacaccagttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtca 117  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  3810298 aagaattcaccagttaaatcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgtta 3810199  T
Q  118 ttggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 203  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810198 tcggaatttggggtatgggtggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 3810113  T

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Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 4218909 - 4218740
Alignment:
Q  34 actcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtat 133  Q
    ||||||||| |||| ||||||| |||||| | ||| |||||||||| ||||||||||| ||||||||   ||||| |||||| |||||||||||||||||    
T  4218909 actcaaaaggacttattggaatggacaaaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtat 4218810  T
Q  134 gggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4218809 gggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 4218740  T

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Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 203
Target Start/End: Complemental strand, 3817876 - 3817681
Alignment:
Q  8 gagtgagatgaagaatacaccagttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaag 107  Q
    ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||| | ||| |  ||||||| ||||||||||||||||||||| || ||    
T  3817876 gagtgagctgaagaattcaccggttaactcaaaagaacttgttggaattgacaaaccaattgcggatttgaattcattgttaaagaaagagtcagaacag 3817777  T
Q  108 gcccgtgtcattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 203  Q
    | |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||  ||||| | |||| || ||||||||||||    
T  3817776 gtccgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgt 3817681  T

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Target: chr4; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 3987268 - 3987092
Alignment:
Q  27 ccagttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaattt 126  Q
    |||||||||||||||| |||| |||||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||    
T  3987268 ccagttaactcaaaaggacttattggaattgacaaatcaattgcacatttaaattcattgttaaagaaagagtcacaaaaggtccgtgtgattggaattt 3987169  T
Q  127 ggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 203  Q
    ||||||||   || ||||||||||||||||||||| ||||| | ||| |||||| | | ||||||||||||||||||    
T  3987168 ggggtatgcctggcattggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgt 3987092  T

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Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 4010269 - 4010093
Alignment:
Q  27 ccagttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaattt 126  Q
    |||||||||||||||| |||| |||||||||||||||| ||| |||||||||| ||||||||| | ||||||||| |||||| | |||||||||||||||    
T  4010269 ccagttaactcaaaaggacttattggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtcagtgtcattggaattt 4010170  T
Q  127 ggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 203  Q
    |||| |||||  |||||||||||||||||||||||  |||| | ||| |||||| ||| ||||||||||| ||||||    
T  4010169 ggggcatgggaagtattggcaagacaactattgcaggagaaatttttaaccaaaattgctctgaatatgaaggttgt 4010093  T

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Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 3932834 - 3933007
Alignment:
Q  30 gttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggg 129  Q
    ||||| ||||||  ||||||||||||||||||| | ||| || ||||||| ||||||||||||||||||||| || ||| |||||| |||||||||||||    
T  3932834 gttaaatcaaaaagacttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg 3932933  T
Q  130 gtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 203  Q
    | |||||||||||||||||||||||||||||| ||||| |||||  ||||| | |||| || ||||||||||||    
T  3932934 gcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgt 3933007  T

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Target: chr4; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 34 - 203
Target Start/End: Complemental strand, 3801852 - 3801683
Alignment:
Q  34 actcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtat 133  Q
    ||||| ||| |||| ||||||| |||| | | ||| |||||||||| ||||||||||| ||||||||   ||||| |||||| |||||||||||||||||    
T  3801852 actcagaaggacttattggaatggacagaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtat 3801753  T
Q  134 gggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 203  Q
    |||||||||||||||||||||||||||| ||||| ||||| |||||| | | | ||||||||||||||||    
T  3801752 gggcggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgt 3801683  T

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Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 3919654 - 3919783
Alignment:
Q  74 tttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattattt 173  Q
    |||||| ||||||||||||||||||||| || ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||    
T  3919654 tttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatattt 3919753  T
Q  174 gaccaaatttgttctgaatatgatggttgt 203  Q
      ||||| | |||| || ||||||||||||    
T  3919754 agccaaaatcgttccgattatgatggttgt 3919783  T

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Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 4002562 - 4002398
Alignment:
Q  37 caaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtatggg 136  Q
    |||||| |||| ||||||||| |||| |  || |||||||  |||||||||||    || ||| | |||||| |||||||||||||||||||||||||||    
T  4002562 caaaaggacttattggaattggcaaaccagttgcacatttagaatcattgttacgtcaacagttagaaaaggtccgtgtcattggaatttggggtatggg 4002463  T
Q  137 cggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggtt 201  Q
     |||||||||||||||||||||||  ||||| | ||| ||| || ||| ||||||||||| ||||    
T  4002462 aggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctgaatatgaaggtt 4002398  T

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Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 4025432 - 4025323
Alignment:
Q  94 aagagtcacaaaaggcccgtgtcattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaata 193  Q
    |||||||| ||||||  ||||| |||||||||||||||||||| |||||||||||||||||||||||  ||||| | ||| | |||| ||| ||||||||    
T  4025432 aagagtcagaaaaggttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaata 4025333  T
Q  194 tgatggttgt 203  Q
    ||| ||||||    
T  4025332 tgaaggttgt 4025323  T

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Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 3954360 - 3954451
Alignment:
Q  112 gtgtcattggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgt 203  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||| | | | ||| || ||| ||||||||||| ||||||    
T  3954360 gtgtcattggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttataaccgaagttgctctgaatatgaaggttgt 3954451  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 3963218 - 3963267
Alignment:
Q  118 ttggaatttggggtatgggcggtattggcaagacaactattgcaaaagaa 167  Q
    |||| |||||||||||||| |||||||||||||||||  ||||| |||||    
T  3963218 ttgggatttggggtatgggtggtattggcaagacaacccttgcagaagaa 3963267  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 4018890 - 4018830
Alignment:
Q  118 ttggaatttggggtatgggcggtattggcaagacaactattgcaaaagaattatttgacca 178  Q
    |||| |||||||| ||||||||||||||||| |||||  ||||| ||||| ||||| ||||    
T  4018890 ttgggatttggggcatgggcggtattggcaaaacaacccttgcagaagaagtatttcacca 4018830  T

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Target: scaffold1360 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 167
Target Start/End: Original strand, 1829 - 1966
Alignment:
Q  30 gttaactcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggg 129  Q
    ||||| ||||||  ||||||||||||||||||| | ||| || ||||||| ||||||||||||||||||||| || ||| |||||| |||||||||||||    
T  1829 gttaaatcaaaaagacttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg 1928  T
Q  130 gtatgggcggtattggcaagacaactattgcaaaagaa 167  Q
    | |||||||||||||||||||||||||||||| |||||    
T  1929 gcatgggcggtattggcaagacaactattgcagaagaa 1966  T

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Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 13398213 - 13398054
Alignment:
Q  37 caaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccgtgtcattggaatttggggtatggg 136  Q
    |||||| |||| |||||||||| ||| | ||| |||||||  || |||||||| |  |||||||| ||||||  || || ||||| ||||||||||||||    
T  13398213 caaaaggacttattggaattgagaaagcaattgcacatttagaaccattgttacatcaagagtcagaaaaggttcgcgtaattggtatttggggtatggg 13398114  T
Q  137 cggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatga 196  Q
     |||||||| ||||||||||||||  ||||| | ||| | ||||||||||||||||||||    
T  13398113 aggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctgaatatga 13398054  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 7069185 - 7069135
Alignment:
Q  117 attggaatttggggtatgggcggtattggcaagacaactattgcaaaagaa 167  Q
    |||||||||||||||||| | |||||||| ||||||||||||||| |||||    
T  7069185 attggaatttggggtatgagtggtattggaaagacaactattgcagaagaa 7069135  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 42859033 - 42858991
Alignment:
Q  113 tgtcattggaatttggggtatgggcggtattggcaagacaact 155  Q
    ||||||||| |||||||| |||||||||||||| |||||||||    
T  42859033 tgtcattggcatttggggcatgggcggtattgggaagacaact 42858991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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