View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15967_low_12 (Length: 206)
Name: NF15967_low_12
Description: NF15967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15967_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 26617135 - 26616964
Alignment:
| Q |
17 |
actttggagaaacaagaaaataaactaagaaataagtttcacctaagagttatttacgagtgtccatttatttaacattagtggcgaaactttcttctca |
116 |
Q |
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| T |
26617135 |
actttggagaaacaagaaaataaactaagaaataagtttcacctaagagttatttacgagtgtccatttatttaacattagtggcgaaactttcttctca |
26617036 |
T |
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| Q |
117 |
cttccctaatctgtgtggatcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatct |
188 |
Q |
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| T |
26617035 |
cttccctaatctgtgtggatcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatct |
26616964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 26723063 - 26722892
Alignment:
| Q |
17 |
actttggagaaacaagaaaataaactaagaaataagtttcacctaagagttatttacgagtgtccatttatttaacattagtggcgaaactttcttctca |
116 |
Q |
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| T |
26723063 |
actttggagaaacaagaaaataaactaagaaataagtttcacctaagagttatttacgagtgtccatttatttaacattagtggcgaaactttcttctca |
26722964 |
T |
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| Q |
117 |
cttccctaatctgtgtggatcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatct |
188 |
Q |
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| T |
26722963 |
cttccctaatctgtgtggatcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatct |
26722892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 26811221 - 26811169
Alignment:
| Q |
134 |
gatcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattat |
186 |
Q |
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| T |
26811221 |
gatcaattattgttcaactttttctttagtgaaaatcattgcagaaccattat |
26811169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 26848291 - 26848238
Alignment:
| Q |
135 |
atcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattatct |
188 |
Q |
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||||||||||| ||||||||| || | |||||||||| |||||||||||||||| |
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| T |
26848291 |
atcaattattgctcaactttttctttagtgaaaatcattgcagaaccattatct |
26848238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 26974663 - 26974611
Alignment:
| Q |
134 |
gatcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattat |
186 |
Q |
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| T |
26974663 |
gatcaattattgttcaactttttcttttgtgaaactcattgcagaaccattat |
26974611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 26974804 - 26974753
Alignment:
| Q |
60 |
taagagttatttacgagtgtccatttatttaacattagtggcgaaactttcttc |
113 |
Q |
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| T |
26974804 |
taagagttatttatgagtgtccatt--tttaacattagtagcgaaacttccttc |
26974753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 27667862 - 27667911
Alignment:
| Q |
137 |
caattattgttcaacttttactgtggtgaaaatcactgcagaaccattat |
186 |
Q |
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| T |
27667862 |
caattattgttcaactttttctttactgaaaaacactgcagaaccattat |
27667911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 17994256 - 17994307
Alignment:
| Q |
135 |
atcaattattgttcaacttttactgtggtgaaaatcactgcagaaccattat |
186 |
Q |
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| T |
17994256 |
atcaattattgttcaactttttctttactgaaaatcattgcagaaccattat |
17994307 |
T |
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