View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15967_low_3 (Length: 483)

Name: NF15967_low_3
Description: NF15967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15967_low_3
NF15967_low_3
[»] chr4 (14 HSPs)
chr4 (18-241)||(4021636-4021859)
chr4 (239-483)||(3809946-3810190)
chr4 (245-483)||(3986931-3987169)
chr4 (239-483)||(4025156-4025400)
chr4 (239-483)||(4002229-4002473)
chr4 (389-483)||(3817664-3817758)
chr4 (389-483)||(3919706-3919800)
chr4 (389-483)||(3932930-3933024)
chr4 (400-483)||(3801677-3801760)
chr4 (239-483)||(4009926-4010170)
chr4 (400-483)||(4218734-4218817)
chr4 (239-330)||(3954510-3954601)
chr4 (389-483)||(3954374-3954468)
chr4 (243-348)||(3801520-3801625)
[»] chr5 (1 HSPs)
chr5 (239-483)||(13397880-13398124)
[»] scaffold0376 (1 HSPs)
scaffold0376 (101-178)||(5113-5190)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 7e-78; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 4021636 - 4021859
Alignment:
Q  18 aaaatgatacaatttggtccggtttaataaagtataggtacagtccagtttcagaaaaattgctctgtccagatattgtgcagtcgggaaggagagactc 117  Q
    |||||| ||| ||||||| | | ||||||||||||||||||||||||||||||| ||||||||||  ||||||||  ||| |||||||||||| ||||||    
T  4021636 aaaatggtactatttggttcaggttaataaagtataggtacagtccagtttcaggaaaattgctccatccagataccgtgtagtcgggaaggatagactc 4021735  T
Q  118 attatggtggcgaagtttatgttctactggaaaggtatgtgaagtcgaaccaaactggtttacatattaagttaagtgagtagttagaaacggtgaaaag 217  Q
     ||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  4021736 gttatggtggcgatatttatgttctattggaaaggcatgtgaagtcgaaccaaactggtttacaaattaagttaagtgagtagttggaaacggtgaaaag 4021835  T
Q  218 tgaaaacacattgttttggagaga 241  Q
    ||||||||||||||||||||||||    
T  4021836 tgaaaacacattgttttggagaga 4021859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 239 - 483
Target Start/End: Original strand, 3809946 - 3810190
Alignment:
Q  239 agaacaataagaaccatcatgcggccaacccgtctcacaatatcactagacaatctatttggtgtatcaattttcacatcttctgctaatagatcagaaa 338  Q
    ||||| ||||||||| |||||||||||| ||| ||| |||||||||||| ||| | |||||||||||||||||||||||||||||| ||||| | |||||    
T  3809946 agaacgataagaaccttcatgcggccaatccgcctctcaatatcactaggcaaccaatttggtgtatcaattttcacatcttctgccaatagtttagaaa 3810045  T
Q  339 aaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttttccaaaaaacaacaaccatcatattcagaacgattttggcttaa 438  Q
    |||| || |  ||||||   | |||||||||       |||| || ||||||||||||||| ||||||||||||||||||||||||| | |||||   ||    
T  3810046 aaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccaagaaacaacaaccatcatattcagaacaaatttggtcaaa 3810145  T
Q  439 taattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||    
T  3810146 taattcttttgcaatagttgtcttgccaataccacccatacccca 3810190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 245 - 483
Target Start/End: Original strand, 3986931 - 3987169
Alignment:
Q  245 ataagaaccatcatgcggccaacccgtctcacaatatcactagacaatctatttggtgtatcaattttcacatcttctgctaatagatcagaaaaaaggt 344  Q
    ||||||||| ||||||| ||||  |||||| |||||||||| ||||| ||||||||||||||||||||||||||||| || ||||  | || |||||||     
T  3986931 ataagaaccttcatgcgtccaattcgtctctcaatatcactggacaacctatttggtgtatcaattttcacatcttcggccaatattttagtaaaaaggg 3987030  T
Q  345 tttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattc 444  Q
    |||| ||||||  ||  ||||||||       ||||||| ||| |||||| |||||||||||||||||||||||||||| ||||||||| | || | |||    
T  3987031 tttcttttaaagattctattccatgtaattttaacttttcactcacctttgccaaaaaacaacaaccatcatattcagagcgattttggttaaaaatttc 3987130  T
Q  445 ttcggcaatagttgacttgccaataccacccatacccca 483  Q
    ||| |||||||||| ||||||||| |||  |||||||||    
T  3987131 ttctgcaatagttgtcttgccaatgccaggcatacccca 3987169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 239 - 483
Target Start/End: Original strand, 4025156 - 4025400
Alignment:
Q  239 agaacaataagaaccatcatgcggccaacccgtctcacaatatcactagacaatctatttggtgtatcaattttcacatcttctgctaatagatcagaaa 338  Q
    ||||||||||| ||| |||| ||||||| || |||| |||||| ||||||||| | |||||||| ||| |||||||||||||||||||||||   |||||    
T  4025156 agaacaataaggaccttcatacggccaatccttctctcaatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtctagaaa 4025255  T
Q  339 aaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttttccaaaaaacaacaaccatcatattcagaacgattttggcttaa 438  Q
    |||| ||||| || |||  | | ||||||||       || | || |||||||||| |||||||||||||||| ||||||||||| | ||||||  | ||    
T  4025256 aaagtttttctttcaaaaatgttattccatgtcttcctaattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttgtttaaa 4025355  T
Q  439 taattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
     | ||||||||||||||||| |||||||||||| |||||||||||    
T  4025356 aatttcttcggcaatagttgtcttgccaatacctcccatacccca 4025400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 483
Target Start/End: Original strand, 4002229 - 4002473
Alignment:
Q  239 agaacaataagaaccatcatgcggccaacccgtctcacaatatcactagacaatctatttggtgtatcaattttcacatcttctgctaatagatcagaaa 338  Q
    ||||||||||||||| |||| ||||||| |   |||  ||||| | ||||||  | |||||||| || ||||||||||||||||||||||||   |||||    
T  4002229 agaacaataagaaccttcatacggccaatcatcctctgaatataattagacagcccatttggtgaattaattttcacatcttctgctaatagtgtagaaa 4002328  T
Q  339 aaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttttccaaaaaacaacaaccatcatattcagaacgattttggcttaa 438  Q
    |||| ||||| ||||||  | | ||||||||        | | || |||||||||||||||||||||| |||| ||||||||||| | | || || | ||    
T  4002329 aaagcttttcttttaaaaatgttattccatgccttcctgattcttcacttaccttttccaaaaaacaaaaaccttcatattcagagcaacttcggttaaa 4002428  T
Q  439 taattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
     | |||||| |||||||||| |||||||||||| |||||||||||    
T  4002429 aacttcttcagcaatagttgtcttgccaatacctcccatacccca 4002473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 389 - 483
Target Start/End: Original strand, 3817664 - 3817758
Alignment:
Q  389 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||| |||||||||| |||||||||||| ||||| |||||    
T  3817664 accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccca 3817758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 389 - 483
Target Start/End: Complemental strand, 3919800 - 3919706
Alignment:
Q  389 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||| |||||||||| |||||||||||| ||||| |||||    
T  3919800 accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccca 3919706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 389 - 483
Target Start/End: Complemental strand, 3933024 - 3932930
Alignment:
Q  389 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||| |||| |||||| |||||||||| |||||||||||| ||||| |||||    
T  3933024 accttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccca 3932930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 3801677 - 3801760
Alignment:
Q  400 aaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
    |||||||||||||||||||||| | ||||||||| | |||| |||||| |||||||||| |||||||||||| |||||||||||    
T  3801677 aaaacaacaaccatcatattcaaagcgattttggttaaatatttcttctgcaatagttgtcttgccaataccgcccatacccca 3801760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 483
Target Start/End: Original strand, 4009926 - 4010170
Alignment:
Q  239 agaacaataagaaccatcatgcggccaacccgtctcacaatatcactagacaatctatttggtgtatcaattttcacatcttctgctaatagatcagaaa 338  Q
    ||||||||||||||| |||| || |||| || ||||||| ||| | ||||||| | |||||| | |   |||||||||||||||||||||||   |||||    
T  4009926 agaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaatagtgtagaaa 4010025  T
Q  339 aaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttttccaaaaaacaacaaccatcatattcagaacgattttggcttaa 438  Q
    |||| ||||| || |||  | |  |||||||       || |  |  |||||||||||||||||||||||||| ||||||||||| | ||||||| | ||    
T  4010026 aaagtttttctttcaaaaatgttcttccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaattttggttaaa 4010125  T
Q  439 taattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
     | |||| | |||||||||| |||||||||||  ||||| |||||    
T  4010126 aatttctcctgcaatagttgtcttgccaatacttcccatgcccca 4010170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 483
Target Start/End: Original strand, 4218734 - 4218817
Alignment:
Q  400 aaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
    |||||||||||||||||||||||||| | |||||   ||||||||||  |||||||||| |||||||||||| |||||||||||    
T  4218734 aaaacaacaaccatcatattcagaacaaatttggtcaaataattcttttgcaatagttgtcttgccaataccgcccatacccca 4218817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 3954601 - 3954510
Alignment:
Q  239 agaacaataagaaccatcatgcggccaacccgtctcacaatatcactagacaatctatttggtgtatcaattttcacatcttctgctaatag 330  Q
    ||||||||||||||| |||| ||||||| || ||||  ||||| | ||||||| | |||||||| ||| |||||||||||||||||||||||    
T  3954601 agaacaataagaaccttcatacggccaatccttctctgaatattattagacaacccatttggtgaatcgattttcacatcttctgctaatag 3954510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 389 - 483
Target Start/End: Complemental strand, 3954468 - 3954374
Alignment:
Q  389 accttttccaaaaaacaacaaccatcatattcagaacgattttggcttaataattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
    |||||| |||||||||||||||| ||||||||||| | | || || |  | | |||||| |||||||||| |||||||||||| |||||||||||    
T  3954468 acctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagcaatagttgtcttgccaatacctcccatacccca 3954374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 3801520 - 3801625
Alignment:
Q  243 caataagaaccatcatgcggccaacccgtctcacaatatcactagacaatctatttggtgtatcaattttcacatcttctgctaatagatcagaaaaaag 342  Q
    ||||||||||| |||| ||||||| || |||   ||||| | ||||||| | |||||||| ||| ||||||||||||||   |||||| | |||||||||    
T  3801520 caataagaaccttcatacggccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaataggttagaaaaaag 3801619  T
Q  343 gttttc 348  Q
     |||||    
T  3801620 cttttc 3801625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 483
Target Start/End: Original strand, 13397880 - 13398124
Alignment:
Q  239 agaacaataagaaccatcatgcggccaacccgtctcacaatatcactagacaatctatttggtgtatcaattttcacatcttctgctaatagatcagaaa 338  Q
    ||||||||||||||| ||||  |||||| || ||||  ||||| ||||| ||| | ||||| || ||| ||||| |||||||||||||||||   |||||    
T  13397880 agaacaataagaaccttcatatggccaatccttctctgaatataactaggcaacccatttgatgaatcgatttttacatcttctgctaatagtgtagaaa 13397979  T
Q  339 aaaggttttcctttaaatgtttcattccatgnnnnnnnaactttttacttaccttttccaaaaaacaacaaccatcatattcagaacgattttggcttaa 438  Q
     ||| ||||| ||||||      ||||||||       || | || ||| |||||| ||||||||||||| || ||||||||||||| | ||||  | ||    
T  13397980 caagcttttcttttaaaaacgctattccatgccttcctaattcttcactcacctttgccaaaaaacaacatccttcatattcagaacaaatttgattaaa 13398079  T
Q  439 taattcttcggcaatagttgacttgccaataccacccatacccca 483  Q
     | ||||||||||||||||| ||| |||||||| |||||||||||    
T  13398080 aatttcttcggcaatagttgtctttccaatacctcccatacccca 13398124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 5113 - 5190
Alignment:
Q  101 tcgggaaggagagactcattatggtggcgaagtttatgttctactggaaaggtatgtgaagtcgaaccaaactggttt 178  Q
    |||||||||  |||||| |||||||||||   ||||||||| |  |||||||| |||||||| |||||||||||||||    
T  5113 tcgggaaggttagactcgttatggtggcgtgatttatgttcaataggaaaggtgtgtgaagtggaaccaaactggttt 5190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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