View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15967_low_6 (Length: 427)
Name: NF15967_low_6
Description: NF15967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15967_low_6 |
 | |
|
| [»] scaffold0576 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0576 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 4967 - 4564
Alignment:
| Q |
9 |
caaaggtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4967 |
caaaagtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
4868 |
T |
|
| Q |
109 |
ttggtgccaaatagagaagtnnnnnnnnngatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4867 |
ttggtgccaaatagagaagtaaaaaaaa-gatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
4769 |
T |
|
| Q |
209 |
tatgaatatgaataaaggatctaggtatctgttcttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4768 |
tatgaatatgaataaaggatctaggtatctgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
4669 |
T |
|
| Q |
309 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4668 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
4569 |
T |
|
| Q |
409 |
ataat |
413 |
Q |
| |
|
||||| |
|
|
| T |
4568 |
ataat |
4564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Original strand, 2751579 - 2751982
Alignment:
| Q |
9 |
caaaggtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2751579 |
caaaagtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
2751678 |
T |
|
| Q |
109 |
ttggtgccaaatagagaagtnnnnnnnnngatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2751679 |
ttggtgccaaatagagaagtaaaaaaaa-gatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacgtgataac |
2751777 |
T |
|
| Q |
209 |
tatgaatatgaataaaggatctaggtatctgttcttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2751778 |
tatgaatatgaataaaggatctaggtatctgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
2751877 |
T |
|
| Q |
309 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2751878 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
2751977 |
T |
|
| Q |
409 |
ataat |
413 |
Q |
| |
|
||||| |
|
|
| T |
2751978 |
ataat |
2751982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 15359983 - 15359580
Alignment:
| Q |
9 |
caaaggtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15359983 |
caaaagtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
15359884 |
T |
|
| Q |
109 |
ttggtgccaaatagagaagtnnnnnnnnngatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15359883 |
ttggtgccaaatagagaagtaaaaaaaa-gatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacgtgataac |
15359785 |
T |
|
| Q |
209 |
tatgaatatgaataaaggatctaggtatctgttcttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15359784 |
tatgaatatgaataaaggatctaggtatctgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
15359685 |
T |
|
| Q |
309 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15359684 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
15359585 |
T |
|
| Q |
409 |
ataat |
413 |
Q |
| |
|
||||| |
|
|
| T |
15359584 |
ataat |
15359580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 28659063 - 28658660
Alignment:
| Q |
9 |
caaaggtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28659063 |
caaaagtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctacagttttagaag |
28658964 |
T |
|
| Q |
109 |
ttggtgccaaatagagaagtnnnnnnnnngatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28658963 |
ttggtgccaaatagagaagtaaaagaaa-gatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
28658865 |
T |
|
| Q |
209 |
tatgaatatgaataaaggatctaggtatctgttcttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28658864 |
tatgaatatgaataaaggatctaggtatttgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgttt |
28658765 |
T |
|
| Q |
309 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28658764 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
28658665 |
T |
|
| Q |
409 |
ataat |
413 |
Q |
| |
|
||||| |
|
|
| T |
28658664 |
ataat |
28658660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 3734516 - 3734113
Alignment:
| Q |
9 |
caaaggtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3734516 |
caaaagtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctaaagttttagaag |
3734417 |
T |
|
| Q |
109 |
ttggtgccaaatagagaagtnnnnnnnnngatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3734416 |
ttggtgccaaatagagaagtaaaaaaaa-gatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacatgataac |
3734318 |
T |
|
| Q |
209 |
tatgaatatgaataaaggatctaggtatctgttcttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3734317 |
tatgaatatgaataaaggatctaggtatatgtccttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtat |
3734218 |
T |
|
| Q |
309 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3734217 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
3734118 |
T |
|
| Q |
409 |
ataat |
413 |
Q |
| |
|
||||| |
|
|
| T |
3734117 |
ataat |
3734113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 9 - 413
Target Start/End: Complemental strand, 20265231 - 20264828
Alignment:
| Q |
9 |
caaaggtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaag |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20265231 |
caaaagtatgttagaaaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctacagttttagaag |
20265132 |
T |
|
| Q |
109 |
ttggtgccaaatagagaagtnnnnnnnnngatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20265131 |
ttggtgccaaatagagaagtaaaaaaaa-gatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataac |
20265033 |
T |
|
| Q |
209 |
tatgaatatgaataaaggatctaggtatctgttcttaaatttgacaagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgtct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20265032 |
tatgaatatgaataaaggatctaggtatttgtccttaaatttgactagtttgaatcaataaattaatcaatcaaggatctcaagcaatgtgtttttgttt |
20264933 |
T |
|
| Q |
309 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20264932 |
ttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaataagctactaagaagtacaaa |
20264833 |
T |
|
| Q |
409 |
ataat |
413 |
Q |
| |
|
||||| |
|
|
| T |
20264832 |
ataat |
20264828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 138 - 288
Target Start/End: Complemental strand, 18203945 - 18203794
Alignment:
| Q |
138 |
gatatgttgcaatgtgaatatatcttttagtggaataagttgtacattcataaggtaaaacacttgataactatgaatatgaataaaggatctaggta-t |
236 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
18203945 |
gatatgttgcaatgtgaacatatcttttagtggaataagttgtacattcataaggtaaaaaacttgataactatgaatatgaatcaaggatctaggtatt |
18203846 |
T |
|
| Q |
237 |
ctgttcttaaatttgacaagtttgaatcaataaattaatcaatcaaggatct |
288 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18203845 |
ctgtccttaaatttgacaagtttgaatcaatgaattaatcaatcaaggatct |
18203794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 290 - 413
Target Start/End: Complemental strand, 18199088 - 18198967
Alignment:
| Q |
290 |
aagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaata |
389 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | ||||||||| | ||||||||||||| |||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
18199088 |
aagcaatgtgttttagtttttaatatgaacta--agtataatttaaaaaaaaccagatctctcaaatcaatattagaaaccaaaatttaaatccaaaata |
18198991 |
T |
|
| Q |
390 |
agctactaagaagtacaaaataat |
413 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
18198990 |
agcttctaagaagtacaaaataat |
18198967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 18204136 - 18204053
Alignment:
| Q |
24 |
aaggtacaaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcaccacatgatgttctctatagttttagaagtt |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |
|
|
| T |
18204136 |
aaggtataaggttttgtgaatgtaatctaggctccaaggtgttttaaagacattcacca---tattttctctacagttttagaagtt |
18204053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 290 - 413
Target Start/End: Original strand, 288709 - 288830
Alignment:
| Q |
290 |
aagcaatgtgtttttgtctttaatatgaactataactataatttagacaaaaccagatctcacaaaccaatattagaaaccaaaatttgaataaaaaata |
389 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | ||||||||| | ||||||||||||| |||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
288709 |
aagcaatgtgttttagtttttaatatgaacta--agtataatttaaaaaaaaccagatctctcaaatcaatattagaaaccaaaatttaaatccaaaata |
288806 |
T |
|
| Q |
390 |
agctactaagaagtacaaaataat |
413 |
Q |
| |
|
|||| ||||||||||||||||||| |
|
|
| T |
288807 |
agcttctaagaagtacaaaataat |
288830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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