View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15968_high_10 (Length: 290)
Name: NF15968_high_10
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15968_high_10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 26018574 - 26018846
Alignment:
| Q |
17 |
acaactaaaacc--caatgttagtactaattaacccaattccttgaaagcaccaaatgctcacccgtgatacaatggcacatagtattgccaattggcca |
114 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26018574 |
acaactaaaacctccaatgttactactaa---acccaattccttgaaagtaccaaatgatcacccgtgatacaatggcacatagtattgccaattggcca |
26018670 |
T |
|
| Q |
115 |
gcgaagccatgatcacgggaacattatgtacaatatagtaataatatcctgcaaattgcaattcaacattttctcacnnnnnnnnnnnngttctcattct |
214 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
26018671 |
gcgaggccatggtcacgggaacattatgtacaatatagtaataatatcctgcaaattgcaattcaacattttcacactatatatatatagttctcattct |
26018770 |
T |
|
| Q |
215 |
catggatatgacagtgtagttctgattttcattcaccctatatatataaatttgagcagagatggaggcatacaac |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26018771 |
catggatatgacagtgtagttctgattttcattcaccctatatatataaatttgagcagagatggaggcatacaac |
26018846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University