View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15968_high_12 (Length: 256)

Name: NF15968_high_12
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15968_high_12
NF15968_high_12
[»] chr4 (13 HSPs)
chr4 (17-175)||(54783177-54783335)
chr4 (176-237)||(39786553-39786614)
chr4 (43-98)||(54789255-54789310)
chr4 (17-98)||(52281838-52281919)
chr4 (176-219)||(23255938-23255981)
chr4 (176-213)||(18360194-18360231)
chr4 (176-213)||(36602697-36602734)
chr4 (176-208)||(4209585-4209617)
chr4 (176-208)||(18359976-18360008)
chr4 (176-208)||(23603650-23603682)
chr4 (176-208)||(36602920-36602952)
chr4 (176-208)||(50971654-50971686)
chr4 (178-218)||(55190930-55190970)
[»] chr2 (5 HSPs)
chr2 (176-237)||(32776097-32776158)
chr2 (176-237)||(9877280-9877341)
chr2 (176-237)||(18718242-18718303)
chr2 (176-237)||(34826915-34826976)
chr2 (176-205)||(38963522-38963551)
[»] chr8 (5 HSPs)
chr8 (43-98)||(19295295-19295350)
chr8 (176-231)||(1580968-1581023)
chr8 (176-218)||(40013654-40013696)
chr8 (176-237)||(6470848-6470909)
chr8 (176-208)||(14522605-14522637)
[»] chr6 (1 HSPs)
chr6 (176-238)||(30237168-30237230)
[»] chr5 (8 HSPs)
chr5 (176-219)||(30779960-30780003)
chr5 (176-219)||(35290289-35290332)
chr5 (190-237)||(43517257-43517304)
chr5 (176-237)||(4925035-4925096)
chr5 (180-237)||(14475431-14475488)
chr5 (176-237)||(29627271-29627332)
chr5 (176-237)||(37516147-37516208)
chr5 (176-208)||(39036636-39036668)
[»] chr7 (2 HSPs)
chr7 (177-231)||(48531326-48531380)
chr7 (176-208)||(48531548-48531580)
[»] scaffold0366 (1 HSPs)
scaffold0366 (176-237)||(14062-14123)
[»] chr3 (1 HSPs)
chr3 (180-237)||(46483558-46483615)
[»] chr1 (1 HSPs)
chr1 (176-237)||(16751650-16751711)


Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 54783335 - 54783177
Alignment:
Q  17 cacagatagcatgacaaataaagttctctcttttccgtaagagaagcccggtcccacatcccctcacattttactctgatcgctgcccttcccgacgagc 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54783335 cacagatagcatgacaaataaagttatctcttttccgtaagagaagcccggtcccacataccctcacattttactctgatcgctgcccttcccgacgagc 54783236  T
Q  117 aactcttccctagtaaagttaaagaataatgaatatttgcttattcacatccttaaata 175  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  54783235 aactcttccctagtaaagttaaagaataatgaatacttgcttattcacatccttcaata 54783177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 39786614 - 39786553
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| || |||||||| |||||    
T  39786614 tccctccgtccctcaatagatgacctagttgactctgacacacgtatcaatgcatatgtttt 39786553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 54789255 - 54789310
Alignment:
Q  43 tctcttttccgtaagagaagcccggtcccacatcccctcacattttactctgatcg 98  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||| ||||||||||    
T  54789255 tctctttttcgtaagagaagtccggtcccacatacactcacatttcactctgatcg 54789310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 52281838 - 52281919
Alignment:
Q  17 cacagatagcatgacaaataaagttctctcttttccgtaagagaagcccggtcccacatcccctcacattttactctgatcg 98  Q
    ||||||||||| || | | |||||| ||||||||  |||||||||||| |||||||| || ||||||| | |||||||||||    
T  52281838 cacagatagcaggatacagaaagttttctcttttttgtaagagaagccaggtcccacgtcacctcacactctactctgatcg 52281919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 23255938 - 23255981
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacg 219  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||    
T  23255938 tccctccgtccctcaatagatgacctagttgactctgacacacg 23255981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 18360231 - 18360194
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctga 213  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  18360231 tccctccgtccctcaatagatgacctagttgactctga 18360194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 36602697 - 36602734
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctga 213  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  36602697 tccctccgtccctcaatagatgacctagttgactctga 36602734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 4209617 - 4209585
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgac 208  Q
    ||||||||| |||||||||||||||||||||||    
T  4209617 tccctccgtcccttaatagatgacctagttgac 4209585  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 18359976 - 18360008
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgac 208  Q
    ||||||||| |||||||||||||||||||||||    
T  18359976 tccctccgtcccttaatagatgacctagttgac 18360008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 23603650 - 23603682
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgac 208  Q
    ||||||||||||| |||||||||||||||||||    
T  23603650 tccctccgttcctcaatagatgacctagttgac 23603682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 36602952 - 36602920
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgac 208  Q
    ||||||||| |||||||||||||||||||||||    
T  36602952 tccctccgtcccttaatagatgacctagttgac 36602920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 50971686 - 50971654
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgac 208  Q
    ||||||||| |||||||||||||||||||||||    
T  50971686 tccctccgtcccttaatagatgacctagttgac 50971654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 55190970 - 55190930
Alignment:
Q  178 cctccgttccttaatagatgacctagttgactctgatacac 218  Q
    ||||||| ||| |||||||||||||||||||||||| ||||    
T  55190970 cctccgtccctcaatagatgacctagttgactctgacacac 55190930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 32776158 - 32776097
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |  |||||||| |||||    
T  32776158 tccctccgtcccttaatagatgacctagttgactccgatacacgtaccaatgcatatgtttt 32776097  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 9877341 - 9877280
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||  | |||||||| |||||    
T  9877341 tccctccgtccctcaatagatgacctagttgactctgacacacgtgtgaatgcatatgtttt 9877280  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 18718242 - 18718303
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  || |||||||| |||||    
T  18718242 tccctccgtccctaaataaatgacctagttgactctgacacacatatcaatgcatatgtttt 18718303  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 34826915 - 34826976
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  | ||||||||| |||||    
T  34826915 tccctccgtccctaaataaatgacctagttgactctgacacacatactaatgcatatgtttt 34826976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 38963522 - 38963551
Alignment:
Q  176 tccctccgttccttaatagatgacctagtt 205  Q
    ||||||||||||||||||||||||||||||    
T  38963522 tccctccgttccttaatagatgacctagtt 38963551  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 19295295 - 19295350
Alignment:
Q  43 tctcttttccgtaagagaagcccggtcccacatcccctcacattttactctgatcg 98  Q
    |||||||| ||||||||||| |||||||||||| | ||||||||| ||||||||||    
T  19295295 tctctttttcgtaagagaagtccggtcccacatacactcacatttcactctgatcg 19295350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 1581023 - 1580968
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcata 231  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||| || ||||||||    
T  1581023 tccctccgtccctgaataaatgacctagttgactctgacacacgtatcaatgcata 1580968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 40013654 - 40013696
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacac 218  Q
    ||||||||| |||||||| ||||||||||||||||||| ||||    
T  40013654 tccctccgtcccttaataaatgacctagttgactctgacacac 40013696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 6470848 - 6470909
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    |||| |||| ||| |||| ||||||||||||||||||| ||||| || |||||||| |||||    
T  6470848 tcccaccgtccctcaatatatgacctagttgactctgacacacgtatcaatgcatatgtttt 6470909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 14522637 - 14522605
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgac 208  Q
    ||||||||| |||||||||||||||||||||||    
T  14522637 tccctccgtcccttaatagatgacctagttgac 14522605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 30237168 - 30237230
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgttttt 238  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||| |  |||||||| ||||||    
T  30237168 tccctccgtccctcaatagatgacctagttgactctgacacacgtaccaatgcatatgttttt 30237230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 30780003 - 30779960
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacg 219  Q
    ||||||||||||| ||||||||||||||||||||| || |||||    
T  30780003 tccctccgttcctcaatagatgacctagttgactccgacacacg 30779960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 35290289 - 35290332
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacg 219  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||    
T  35290289 tccctccgtccctcaatagatgacctagttgactctgacacacg 35290332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 43517304 - 43517257
Alignment:
Q  190 aatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    |||||||||||||||||||||||| ||||| | ||||||||| |||||    
T  43517304 aatagatgacctagttgactctgacacacgtactaatgcatatgtttt 43517257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 4925096 - 4925035
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||| ||||||||||||||||||| |||| ||||| |  |||||||| |||||    
T  4925096 tccctccgtccctcaatagatgacctagttgaccctgacacacgtaccaatgcatatgtttt 4925035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 14475488 - 14475431
Alignment:
Q  180 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||| ||||||||||||||||||||||||| || ||||| |  |||||||| |||||    
T  14475488 tccgtcccttaatagatgacctagttgactccgacacacgtacaaatgcatatgtttt 14475431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 29627271 - 29627332
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||| |||| ||||||||||||||||||| ||||  || |||||||| |||||    
T  29627271 tccctccgtccctaaataaatgacctagttgactctgacacacatatcaatgcatatgtttt 29627332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 37516147 - 37516208
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||| ||||||||| |||||||||||||| ||||| |  |||||||| |||||    
T  37516147 tccctccgtccctcaatagatgatctagttgactctgacacacgtaccaatgcatatgtttt 37516208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 39036668 - 39036636
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgac 208  Q
    ||||||||| |||||||||||||||||||||||    
T  39036668 tccctccgtcccttaatagatgacctagttgac 39036636  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 48531326 - 48531380
Alignment:
Q  177 ccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcata 231  Q
    |||||||||||| |||||||||  ||||||||||||| ||||| || ||||||||    
T  48531326 ccctccgttcctcaatagatgatttagttgactctgacacacgtatcaatgcata 48531380  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 48531580 - 48531548
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgac 208  Q
    ||||||||| |||||||||||||||||||||||    
T  48531580 tccctccgtcccttaatagatgacctagttgac 48531548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 14062 - 14123
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||||||| ||| ||||  |||||||||||||||||||||||| |  |||||||| |||||    
T  14062 tccctccgtccctaaataagtgacctagttgactctgatacacgtaccaatgcatatgtttt 14123  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 46483558 - 46483615
Alignment:
Q  180 tccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    ||||| ||| |||||||||||||||||||||||| ||||| |  |||||||| |||||    
T  46483558 tccgtccctcaatagatgacctagttgactctgacacacgtaccaatgcatatgtttt 46483615  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 16751711 - 16751650
Alignment:
Q  176 tccctccgttccttaatagatgacctagttgactctgatacacgaattaatgcatacgtttt 237  Q
    |||||||||||| || ||||||||||||||||||| || ||||| |  |||||||| |||||    
T  16751711 tccctccgttccatattagatgacctagttgactccgacacacgtaccaatgcatatgtttt 16751650  T

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