View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15968_high_5 (Length: 395)
Name: NF15968_high_5
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15968_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 39852867 - 39852495
Alignment:
| Q |
1 |
cctactggttcaatggtattggttcagttgttgctgttgatcaggttagtttctctcctacttcaaaatcaatcatgtcatgtggatgagatctctttgt |
100 |
Q |
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| T |
39852867 |
cctactggttcaatggtattggttcagttgttgctgttgatcaggttagtttctctcctacttcaaaatcaatcatgtcatgtggatgagatcactttgt |
39852768 |
T |
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| Q |
101 |
aagtttcactatatatattaatttccttttattgtattctgtaggaccctaatactaggtacccagttgtggtaagattcaacaaagttaactatgcaaa |
200 |
Q |
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| T |
39852767 |
aagtttcactatat----taatttccttttattgtattgtgtaggaccctaatactaggtacccagttgtggtaagattcaacaaagttaactatgcaaa |
39852672 |
T |
|
| Q |
201 |
tgtatcaacaaacaactatgctttggatgagattgaggaagtcaaatgagtcatcatcatctatatactttaatttgtaattcaagttgctagcttaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39852671 |
tgtatcaacaaacaactatgctttggatgagattgaggaagtcaaatgagtcatcatcatctatctactttaatttgtaattcaagttgctagcttaagg |
39852572 |
T |
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| Q |
301 |
attttcatgtcataaagaagaatgaatgtgtatatcatattttgtgtgatgtctaccattctacctcttgatgacac |
377 |
Q |
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| T |
39852571 |
attttcatgtcataaagaagaatgaatgtgtatatcatattttgtgtgatgtctgccattctacctcttaatgacac |
39852495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 29818110 - 29818209
Alignment:
| Q |
143 |
aggaccctaatactaggtacccagttgtggtaagattcaacaaagttaactatgcaaatgtatcaacaaacaactatgctttggatgagattgaggaagt |
242 |
Q |
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| T |
29818110 |
aggaccccaagactcgctaccctgtcgtggttcgattccagaaagtgaactacgccaatgtatcgacaaataactatgctttggatgagattgaagaagt |
29818209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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