View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15968_high_7 (Length: 338)

Name: NF15968_high_7
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15968_high_7
NF15968_high_7
[»] chr8 (6 HSPs)
chr8 (13-338)||(5057255-5057580)
chr8 (17-109)||(41444936-41445028)
chr8 (233-268)||(13058075-13058110)
chr8 (17-86)||(42854668-42854737)
chr8 (224-308)||(18124997-18125081)
chr8 (45-109)||(25985128-25985192)
[»] chr6 (4 HSPs)
chr6 (17-86)||(5258805-5258874)
chr6 (17-86)||(5631375-5631444)
chr6 (17-70)||(33495765-33495818)
chr6 (247-311)||(6641785-6641849)
[»] chr3 (5 HSPs)
chr3 (17-90)||(19757542-19757615)
chr3 (237-311)||(43308401-43308475)
chr3 (32-99)||(44395003-44395070)
chr3 (44-84)||(28398124-28398164)
chr3 (25-68)||(50630001-50630045)
[»] chr1 (3 HSPs)
chr1 (22-88)||(46226965-46227031)
chr1 (233-293)||(40425456-40425516)
chr1 (22-86)||(32083400-32083464)
[»] chr7 (2 HSPs)
chr7 (28-106)||(20499664-20499742)
chr7 (17-86)||(32630165-32630234)
[»] chr5 (2 HSPs)
chr5 (17-70)||(3394269-3394322)
chr5 (124-168)||(15370792-15370836)


Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 5057255 - 5057580
Alignment:
Q  13 aattcttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttagaggtcca 112  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057255 aattcttagaagtgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttagaggtcca 5057354  T
Q  113 tagtagaacagtacaaaatgatggagaaatagaaaatgtaaagtattgaattcaagtgggattgttggactgaagaagggctgcatgtgatacaaaagta 212  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057355 tagtagaacagtacaaaatgacggagaaatagaaaatgtaaagtattgaattcaagtgggattgttggactgaagaagggctgcatgtgatacaaaagta 5057454  T
Q  213 gcattcaaatcgaaagaaatgttttatcgtacaactgtaagaccaacaatgttgtacaggatggagtgttgcgcggtaaaaaaccaacatgagaataaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5057455 gcattcaaatcgaaagaaatgttttatcgtacaactgtaagaccaacaatgttgtacaggatggagtgttgcgcggtaaaaaaccaacatgagaataaag 5057554  T
Q  313 cgtagcagagatgagattattgtgtt 338  Q
    ||||||||||||||||||||||||||    
T  5057555 cgtagcagagatgagattattgtgtt 5057580  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 41445028 - 41444936
Alignment:
Q  17 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttagaggt 109  Q
    ||||||||  ||| |||||||| |||||| ||||||   ||||||||| ||||| || ||||||||||||| || ||||||||||||||||||    
T  41445028 cttataaggatattgcttccgcatgagtaaaagcaagataaagtatatggaatgtaattttagcaaaaggcgaagcatttctaacttagaggt 41444936  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 13058075 - 13058110
Alignment:
Q  233 gttttatcgtacaactgtaagaccaacaatgttgta 268  Q
    ||||||||||||||| ||||||||||||||||||||    
T  13058075 gttttatcgtacaacagtaagaccaacaatgttgta 13058110  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 42854737 - 42854668
Alignment:
Q  17 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 86  Q
    |||| |||||||||| ||||||||||||||||||||  |  ||||||| ||||| || || |||||||||    
T  42854737 cttaaaagcgtatggtttccgcctgagtagaagcaagacggagtatatggaatgtaacttcagcaaaagg 42854668  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 18124997 - 18125081
Alignment:
Q  224 gaaagaaatgttttatcgtacaactgtaagaccaacaatgttgtacaggatggagtgttgcgcggtaaaaaaccaacatgagaat 308  Q
    ||||| || ||| ||||| ||||| || |||||||||||||||||  | | ||||||||| ||||| || | |||||||||||||    
T  18124997 gaaaggaaagttctatcggacaacagtcagaccaacaatgttgtatggtacggagtgttgggcggttaagagccaacatgagaat 18125081  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 25985128 - 25985192
Alignment:
Q  45 agaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttagaggt 109  Q
    ||||||||  || ||||||| ||||| ||||||||||| |||| || |||||||| |||||||||    
T  25985128 agaagcaagacagagtatatggaatgtaagtttagcaagaggcgaagcatttctagcttagaggt 25985192  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 5258874 - 5258805
Alignment:
Q  17 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 86  Q
    |||| |||||||||||||||||||||||||||||||  |||||||||| ||||| || || |||||||||    
T  5258874 cttagaagcgtatggcttccgcctgagtagaagcaagacaaagtatatggaatgtaacttcagcaaaagg 5258805  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 5631375 - 5631444
Alignment:
Q  17 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 86  Q
    |||| ||| |||||| |||||| |||||||||||||  |||||||||| ||||| || || |||||||||    
T  5631375 cttagaagagtatggtttccgcatgagtagaagcaagacaaagtatatggaatgtaacttcagcaaaagg 5631444  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 33495765 - 33495818
Alignment:
Q  17 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatg 70  Q
    |||| |||||||||| ||||||||||||||||||||  || ||||||| |||||    
T  33495765 cttaaaagcgtatggtttccgcctgagtagaagcaagacagagtatatggaatg 33495818  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 6641849 - 6641785
Alignment:
Q  247 ctgtaagaccaacaatgttgtacaggatggagtgttgcgcggtaaaaaaccaacatgagaataaa 311  Q
    ||||||||||||| ||||||||  ||||  ||||||| |||||||| || |||||||| ||||||    
T  6641849 ctgtaagaccaacgatgttgtatgggataaagtgttgggcggtaaagaaacaacatgaaaataaa 6641785  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 19757542 - 19757615
Alignment:
Q  17 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaa 90  Q
    |||| ||||||||||| ||||||| |||||||||||  || ||||||| ||||| || ||||||||||||||||    
T  19757542 cttagaagcgtatggcatccgccttagtagaagcaagacagagtatatggaatgtaactttagcaaaaggcaaa 19757615  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 43308401 - 43308475
Alignment:
Q  237 tatcgtacaactgtaagaccaacaatgttgtacaggatggagtgttgcgcggtaaaaaaccaacatgagaataaa 311  Q
    |||||||||||| |||||||    ||||||||  ||||||||||||| |||||||| |||||||| |||||||||    
T  43308401 tatcgtacaactttaagaccggtgatgttgtatgggatggagtgttgggcggtaaagaaccaacacgagaataaa 43308475  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 44395003 - 44395070
Alignment:
Q  32 cttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttcta 99  Q
    |||||||||  ||||||||||   | ||||||| |||||||| |||||||||||||||| ||||||||    
T  44395003 cttccgcctatgtagaagcaagatagagtatatggaatgcaactttagcaaaaggcaaagcatttcta 44395070  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 28398164 - 28398124
Alignment:
Q  44 tagaagcaaaccaaagtatattgaatgcaagtttagcaaaa 84  Q
    ||||||||||||| ||||||| |||||||| ||||||||||    
T  28398164 tagaagcaaaccatagtatatggaatgcaattttagcaaaa 28398124  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 50630045 - 50630001
Alignment:
Q  25 cgtatggcttccgcctgagtag-aagcaaaccaaagtatattgaa 68  Q
    |||||||| ||||||||||||| ||||||| ||||||||||||||    
T  50630045 cgtatggcctccgcctgagtagaaagcaaaacaaagtatattgaa 50630001  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 46227031 - 46226965
Alignment:
Q  22 aagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggca 88  Q
    |||||||||| ||||||||||||||||||||| |||||| |||  |||| || || |||||||||||    
T  46227031 aagcgtatggtttccgcctgagtagaagcaaaacaaagtttatgaaatgtaacttcagcaaaaggca 46226965  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 40425456 - 40425516
Alignment:
Q  233 gttttatcgtacaactgtaagaccaacaatgttgtacaggatggagtgttgcgcggtaaaa 293  Q
    |||||| ||||||||| ||||||||||||||||||||  ||||||||| || | |||||||    
T  40425456 gttttaccgtacaactataagaccaacaatgttgtacgtgatggagtggtgggtggtaaaa 40425516  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 32083464 - 32083400
Alignment:
Q  22 aagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 86  Q
    |||||||||| ||||||||||||||||||||  |  ||||||| ||||| || || |||||||||    
T  32083464 aagcgtatggtttccgcctgagtagaagcaagacggagtatatggaatgtaacttcagcaaaagg 32083400  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 20499664 - 20499742
Alignment:
Q  28 atggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaaggcaaaacatttctaacttaga 106  Q
    |||||||| ||||||| ||||| |||||| ||||||| || || || ||||||||||||| || | |||||| ||||||    
T  20499664 atggcttctgcctgagcagaagaaaaccagagtatatggagtgtaattttagcaaaaggcgaagcgtttctagcttaga 20499742  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 32630165 - 32630234
Alignment:
Q  17 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatgcaagtttagcaaaagg 86  Q
    |||| |||||||||| ||||||||||||||||||||  |  ||||||| ||||| || || |||||||||    
T  32630165 cttagaagcgtatggtttccgcctgagtagaagcaagacggagtatatggaatgtaacttcagcaaaagg 32630234  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 3394269 - 3394322
Alignment:
Q  17 cttataagcgtatggcttccgcctgagtagaagcaaaccaaagtatattgaatg 70  Q
    |||| |||||||||| ||||||||||||||||||||  || ||||||| |||||    
T  3394269 cttagaagcgtatggtttccgcctgagtagaagcaagacagagtatatggaatg 3394322  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 15370836 - 15370792
Alignment:
Q  124 tacaaaatgatggagaaatagaaaatgtaaagtattgaattcaag 168  Q
    |||||||||| ||| ||||||||||||||||  ||||||||||||    
T  15370836 tacaaaatgacggataaatagaaaatgtaaaccattgaattcaag 15370792  T

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