View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15968_low_1 (Length: 633)
Name: NF15968_low_1
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15968_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 15 - 607
Target Start/End: Complemental strand, 5373334 - 5372744
Alignment:
| Q |
15 |
aaaggaggggggattcttttgctttttgagaactatggttgggcgtgtgaaatgatgattatatgactctttcaattatttaaccaggtaaaggagaaac |
114 |
Q |
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| T |
5373334 |
aaaggaggggggattcttttgctttttgagaactatggttgggcgtgtgaaatgatgactatatgactctttcaattatttaaccaggtaaaggagaaac |
5373235 |
T |
|
| Q |
115 |
aacaaggacaagctaagacaaatactatttatatatgcattttgtacctacaattcactcattttgttctcaaaagaagtcttcaagaaaaagctcattc |
214 |
Q |
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| T |
5373234 |
aacaaggacaagctaagacaaatactatttatatatgcattttgtacctacaattcactcattttgttctcaaaagaagtcttcaagaaaaagctcattc |
5373135 |
T |
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| Q |
215 |
ctgaaattttttaaatagctataatataagcaagataaggttatccaacagcacaacagagacattatcaatctgcataggttttttattaaaagaaaca |
314 |
Q |
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| T |
5373134 |
ctgaaattttttaaatagctataatataagcaagataaggttatccaacagcacaacagagacattatcaatctgcataggttttttattaaaagaaaca |
5373035 |
T |
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| Q |
315 |
cttgttgttgttgttgaaaaggttttatataagtaaaatagttgggatttcttgccctataatgatatctttgcatgccttattttctttnnnnnnnttg |
414 |
Q |
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| T |
5373034 |
cttgttgtt---gttgaaaaggttttatataagtaaaatagttgggatttcttgccctataatgatatctttgcatgccttattttctttaaaaaaattg |
5372938 |
T |
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| Q |
415 |
tggtcacaatcatagttgcaattatatcgtgtgattattgatattgtgaaaattatata-nnnnnnncttcttaagttagattcatgtacaatgtgtaaa |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5372937 |
tggtcacaatcatagttgcaattatatcgtgtgattattgatattgtgaaaattatatattttttttcttcttaagttagattcatgtacaatgtgtaaa |
5372838 |
T |
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| Q |
514 |
gaaaaatatttattgaaagaggttgaatctactaaatgaatatctattacattgtaatatgatttctgtcgggatatcttatttcgtccaaaat |
607 |
Q |
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| T |
5372837 |
gaaaaatatttgttgaaagaggttgattctactaaatgaatatctattacattgtaatatgatttctgtcgggatatcttatttcgcccaaaat |
5372744 |
T |
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