View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15968_low_12 (Length: 333)
Name: NF15968_low_12
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15968_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 5 - 316
Target Start/End: Original strand, 47904818 - 47905131
Alignment:
| Q |
5 |
actgaaattgaataaagtctaaaaaatactagtaaattttgctagaaacaaaagatacataaatcatgaagnnnnnnnnnctagaaagcaaaaaacagaa |
104 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
47904818 |
actgaaattgaataaagtctaaaaaaaactagtaaattttgctagaaacaaaagacacataaatcatgaagaaaaaaaaactagaaagcaaaaaacagaa |
47904917 |
T |
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| Q |
105 |
tattatgacccagacaaacttata--tataacatagtttagttatcttcatgtaaaggtgtatatatatttgataatctctgttatagcaatagctacat |
202 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47904918 |
tattatgacccagacaaacttatatatataacatagtttagttatcttcatgtaaaggtgtatatatatttgataatctctgttatagcaatagctacat |
47905017 |
T |
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| Q |
203 |
tacacacaaattgattctagtaccattttgttcctctgtctcagtcgctcatttcagtttgtaccatggagccatggcaatagaaatatgccatagacat |
302 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47905018 |
tacgcacaaattgattctagtaccattttgttcctctgtctcagtcgctcatttcagtttgtaccatggagccatggcaatagaaatatgccatagacat |
47905117 |
T |
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| Q |
303 |
attacaccatttag |
316 |
Q |
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|||||||||||||| |
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| T |
47905118 |
attacaccatttag |
47905131 |
T |
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