View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15968_low_4 (Length: 449)
Name: NF15968_low_4
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15968_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 449
Target Start/End: Complemental strand, 3726123 - 3725689
Alignment:
| Q |
15 |
aaatggactctttttctttgtttggctagcttttgtgctggaatgttattcactaataggtaccttttttgcttatgagtttctctatttcgctatcaag |
114 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |
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| T |
3726123 |
aaatgggctctttttctttgtttggctagcttttgtgctggaatgttattcactaataggtacctcttttgcttatgagtttctctatttcact--caag |
3726026 |
T |
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| Q |
115 |
ttttgtcttttgannnnnnnccagttataatgatcactgtgagtaactgatatttttcattgcaatgggtttgaacctaaatgattttgaaggatattgt |
214 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3726025 |
ttttgtcttttgattttttcccagttatgatgatcactgtgagtaactgatattttacatttcaatgggtttgaacctaaatgattttgaaggatattgt |
3725926 |
T |
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| Q |
215 |
agagattcataactacttgttctgcaacattgaattattatattattgatttagcataattcttttgtacatagggattgacctggtggtgtaaaacttt |
314 |
Q |
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||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3725925 |
agagattcacaactacttgttctgcaacattaaatcattatattattgatttagcataattcttttgtacatagggattgacctggtggtgtaaaacttt |
3725826 |
T |
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| Q |
315 |
ggacttaggagaatgctcctctctaggtctaggttcaatattgtaggt--taacaatttcggtgttgggccagtccatttaggaatttgcttcgacttca |
412 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3725825 |
ggacttaggagcatgctcctctctaggtctaggttcaatattgtaggtgataacaattctggtgttgggccagtccatttaggaatttgcttcgacttca |
3725726 |
T |
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| Q |
413 |
actgggtccccgctagtaaatggtgggattggtcctc |
449 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3725725 |
actgggtccccgctagtaaatggtgggattggtcctc |
3725689 |
T |
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