View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15968_low_5 (Length: 447)
Name: NF15968_low_5
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15968_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 20916343 - 20916761
Alignment:
| Q |
11 |
cgaagaatattggttaagattaacattgattaagagtgtttgtttaagcattcaaagagcttgatcttgtgttgaatttaaatgaagcttcaaaatgtag |
110 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20916343 |
cgaaaaatactggttaagattaacattgattaagagtgtttgtttaagcattcaaagagcttgatcttgtgttgaatttaaatgaagcttcaaaatgtag |
20916442 |
T |
|
| Q |
111 |
cttcacaatcccaccatattcatatatagagactaaggtagatattttttatgttgtatgatttacttcagccatgatggtcctgtggaattgtagtgtt |
210 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20916443 |
tttcgcactcccaccatattcatatatagagactaaggtagatattttttatgttgtatgatttacttcagccatgatggtcctgtggaattgtagtgtt |
20916542 |
T |
|
| Q |
211 |
gatttttaatttacaatgatcttgtagcttccttcaattggttttgagcagtggagactgacattaggttaatacatattttgattttgaaaagggaaag |
310 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20916543 |
ggtttttaatttacaatgatcttgtagcttccttcaattggttttgagcagtggagactgacattaggttaatacatattttgattttgaaaagggaaag |
20916642 |
T |
|
| Q |
311 |
ttcatatcatatcatatgaatataaatgtaacatacagtgcttagaataaaaagcactagagattaaaatcgttctccataattttgaataaannnnnnn |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20916643 |
ttcatatcatatcatatgaatataaatgtaacatacaatgcttagaatataaagcactagagattaaaatcgttctccataattttgaataaattttttt |
20916742 |
T |
|
| Q |
411 |
gaatgaatcccaacacaaa |
429 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
20916743 |
gaatgaatcccaacacaaa |
20916761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University