View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15968_low_6 (Length: 444)

Name: NF15968_low_6
Description: NF15968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15968_low_6
NF15968_low_6
[»] chr3 (1 HSPs)
chr3 (6-199)||(27405214-27405404)
[»] chr2 (1 HSPs)
chr2 (10-199)||(5589763-5589952)
[»] chr5 (1 HSPs)
chr5 (125-198)||(38919745-38919818)
[»] chr8 (1 HSPs)
chr8 (230-314)||(18808758-18808843)
[»] chr4 (1 HSPs)
chr4 (235-314)||(51291115-51291195)
[»] chr1 (2 HSPs)
chr1 (53-89)||(228975-229011)
chr1 (136-200)||(17441515-17441578)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 27405214 - 27405404
Alignment:
Q  6 atggacatcatcaactcacaaaggtacgcttacgaggagagaagtcattgtgttttttcatagacaaacacatatgctagactatactaatcatttgaag 105  Q
    |||||||||| ||||||||| ||||||  | | ||||||||||||| ||||||||| ||||   |||||||||||||||||||| | | |||||||||||    
T  27405214 atggacatcagcaactcacataggtacagtgatgaggagagaagtctttgtgttttctcat---caaacacatatgctagactacagtgatcatttgaag 27405310  T
Q  106 tnnnnnnnnnnnnnnnnnngtactctaactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcca 199  Q
    |                  |||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  27405311 taaaaacagaattaaaaaagtactctaactacaacatacaactcattcgtgcaatggtgacgaaattttatgtcgtgtgttttagctttttcca 27405404  T

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Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 5589952 - 5589763
Alignment:
Q  10 acatcatcaactcacaaaggtacgcttacgaggagagaagtcattgtgttttttcatagacaaacacatatgctagactatactaatcatttgaagtnnn 109  Q
    |||||| |||||||||||| |||  | | ||||||||||||  ||||||||| ||||||||||||||||||||||||||| | | ||| ||||||||       
T  5589952 acatcagcaactcacaaagatacagtgatgaggagagaagtgtttgtgttttctcatagacaaacacatatgctagactacagtgatcgtttgaagtaaa 5589853  T
Q  110 nnnnnnnnnnnnnnngtactctaactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcca 199  Q
                   ||| |||||||||||| ||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  5589852 agcataattaaaaaagtattctaactacaacttacaactcattcgtgcaatggtgaagaaattttatgtcgtgcgttttagctttttcca 5589763  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 38919745 - 38919818
Alignment:
Q  125 gtactctaactacaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttcc 198  Q
    ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||| ||||| ||||||||    
T  38919745 gtactataactactacatacaattcattcgtgcaatggtgacgaaattttatgtcgtgcattttatctttttcc 38919818  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 18808758 - 18808843
Alignment:
Q  230 tgctttttaagcacttaaagtggtaacattataggaaagtt-atgcatttattgcattaggtattgaaatctttaattattttaaa 314  Q
    |||| ||||||||| |||| |||||| ||| || ||||||| ||||||||||||||||||  |||||| |||||| || |||||||    
T  18808758 tgctctttaagcacctaaaatggtaagattttatgaaagtttatgcatttattgcattagaaattgaagtctttactttttttaaa 18808843  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 314
Target Start/End: Complemental strand, 51291195 - 51291115
Alignment:
Q  235 tttaagcacttaaagtggtaacattataggaaagtta-tgcatttattgcattaggtattgaaatctttaattattttaaa 314  Q
    ||||||||| |||| |||||| ||| || |||||||  ||||||||||||||| |  |||||| |||||||||||||||||    
T  51291195 tttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtctttaattattttaaa 51291115  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 229011 - 228975
Alignment:
Q  53 ttgtgttttttcatagacaaacacatatgctagacta 89  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  229011 ttgtgttattttatagacaaacacatatgctagacta 228975  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 17441578 - 17441515
Alignment:
Q  136 acaacatacaactcattcgtgcaatggtgacaaaattttatgtcatgcgttttagctttttccat 200  Q
    |||||||| |||||||||||||||| |||||  |||||| |||| |||  |||||||||||||||    
T  17441578 acaacatataactcattcgtgcaatagtgac-gaattttttgtcgtgcactttagctttttccat 17441515  T

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