View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15969_high_1 (Length: 449)
Name: NF15969_high_1
Description: NF15969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15969_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 49920211 - 49919778
Alignment:
| Q |
1 |
tccccttcatggtaatttgtatnnnnnnntgtaaggaattggttgcgaaagtgaagatgcaagtttttattatgtaatcaagtttcacacaaactaatgt |
100 |
Q |
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| T |
49920211 |
tccccttcatggtaatttgtataaaaaaatgtaaggaattggttgcgaaagtgaagatgcaagtttttattatgtaatcaagtttcacacaaactaatgt |
49920112 |
T |
|
| Q |
101 |
aataataattagttggaacattaccacaacatttaaatttaaagaattcctcatcagtgtaagatgcacataggacctgcagcgaagaaaccacaatatc |
200 |
Q |
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| T |
49920111 |
aataataattagttggaacattaccacaacatttaaatttaaagaattcctcatcagtgtaagatgcacataggacctgcagcgaagaaaccacaatatc |
49920012 |
T |
|
| Q |
201 |
atcaaactnnnnnnnccataatatcttacaattaattctaaccagcaggaaaatcaatttacttaatttatgaatgggaaaatagctacaaatgtaacat |
300 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49920011 |
atcaaactaaaaaaaccatcatatcttacaattaattctaaccagcaggaaaatcaatttacttaatttatgaataggaaaatagctacaaatgtaacat |
49919912 |
T |
|
| Q |
301 |
ttgaattaacataacatactgctggactggtaaatggcaccccatctagtgattcagggaaaacctgacaatataaataataattatcagattatatttg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49919911 |
ttgaattaacataacatactgctggactggtaaatggcaccccatctagtgattcagggaaaacctgacaatataaataataattatcagattatatttg |
49919812 |
T |
|
| Q |
401 |
gaactcttgcagcagatatgtttggattaaattt |
434 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
49919811 |
gaactcttgcagcagatatgtttggattaaattt |
49919778 |
T |
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