View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15969_high_5 (Length: 340)
Name: NF15969_high_5
Description: NF15969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15969_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 204 - 324
Target Start/End: Original strand, 27561954 - 27562074
Alignment:
| Q |
204 |
cactgttaatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacatattatcatcat |
303 |
Q |
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| T |
27561954 |
cactgttaatgatttatatctatccaattcagcgatccaatgttgaagttgatcattttccatagagtatactcgggaagtgtgtacatattatcatcat |
27562053 |
T |
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| Q |
304 |
ttagttcattctggaaataaa |
324 |
Q |
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| T |
27562054 |
ttagttcattctggaaataaa |
27562074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 36668689 - 36668870
Alignment:
| Q |
2 |
tttggcctcttccaccttgatttcaacatcatt--------taatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaattgtcatgg |
93 |
Q |
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|||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
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| T |
36668689 |
tttggcctcttccatcttgatttcaagatcattcctttcattaatacacttttgcaactgaatcttgagctcatcagtcctagagtcagaaatgtcatgg |
36668788 |
T |
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| Q |
94 |
atatgctttgcattaacagcacactctaatttcaaattgaattccttctcccgctttgcgtagttaatcctgccagcctaaa |
175 |
Q |
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| T |
36668789 |
atatgccttgcattaaccgcagactccaatttagaattcaattccttctcccgttttgcaatgttagtcctgctagcctaaa |
36668870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 206 - 319
Target Start/End: Original strand, 36669011 - 36669125
Alignment:
| Q |
206 |
ctgttaatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacata-ttatcatcatt |
304 |
Q |
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| T |
36669011 |
ctgtcaatgatttaaatctatccaattcagcaatccaatgttgaagttgatcctttgccaaagagtatactcgggaagtgcgtacatacttatcatcatt |
36669110 |
T |
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| Q |
305 |
tagttcattctggaa |
319 |
Q |
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| T |
36669111 |
tagttcattctggaa |
36669125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 175
Target Start/End: Complemental strand, 27563291 - 27563153
Alignment:
| Q |
35 |
taatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaattgtcatggatatgctttgcattaacagcacactctaatttcaaattgaa |
134 |
Q |
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||||||| || |||||||||| || ||| |||| ||||||| |||||||||||| ||||| || |||||||| ||||| |||| ||||||||||| | |
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| T |
27563291 |
taatacatttctgcaactgaagctcgaggccatcggtcatag--tcagaattgtcaaggatacgccttgcattatcagcagactccaatttcaaattcag |
27563194 |
T |
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| Q |
135 |
ttccttctcccgctttgcgtagttaatcctgccagcctaaa |
175 |
Q |
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| T |
27563193 |
ttccttctcccattttgagatgttagccctgccagcctaaa |
27563153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 29411262 - 29411410
Alignment:
| Q |
35 |
taatacacttttgcaactgaatcttgagctcatcagtcatagagtcagaattgtcatggatatgctttgcattaacagcacactctaatttcaaattgaa |
134 |
Q |
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|||||||||| ||||| |||| ||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| |||| |||||||| || || |
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| T |
29411262 |
taatacacttctgcaattgaagcttgagctcatcaatcctagagtcagaattgtcatggatatgccttgcattaacagcagactccaatttcaacttcaa |
29411361 |
T |
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| Q |
135 |
ttccttctcccgctttgcgtagttaatcctgccagcctaaagttgcatt |
183 |
Q |
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| T |
29411362 |
ctccttctcccgttttgagacgttaaccctgccagcctaaaattgcatt |
29411410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 29411503 - 29411617
Alignment:
| Q |
211 |
aatgatttatatctatccaattcagcgatccaatgtggaagttgatcatttgccatagagtatactcgggaagtgtgtacata-ttatcatcatttagtt |
309 |
Q |
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| T |
29411503 |
aatgatttatatctgtccaattcagcaatccagtgttgaagttgatcatttgccaaagagtatactcgggaattgcgtacatacttatcatcatttagtt |
29411602 |
T |
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| Q |
310 |
cattctggaaataaa |
324 |
Q |
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||||||||||||||| |
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| T |
29411603 |
cattctggaaataaa |
29411617 |
T |
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