View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15969_low_1 (Length: 507)
Name: NF15969_low_1
Description: NF15969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15969_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 50392427 - 50392901
Alignment:
| Q |
1 |
gtaagcccctttaattctacagtatggaagtcaaactttttcattctcagtatgcttttatcatgtcgttgagttcatatgattgctcattatggacaca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50392427 |
gtaagctcctttaattctacagtatggaagtcaaactttttaattctcagtatgcttttatcatgtcgttgagttcatatgattgctcattatggacaca |
50392526 |
T |
|
| Q |
101 |
ctgctcttttcatattactacttttagttttattcatgcnnnnnnngcaaccttttgtaaatgtgatgttggaggtattcctgatcatcagcagcagttg |
200 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50392527 |
ctgctcttttcatattactacttttaattttattcctgcttttat-gcaaccttttgtaaatgtgatgttggaggtattcct---catcagcagcagttg |
50392622 |
T |
|
| Q |
201 |
agttaataaattactaattaaattttttgtttatcaaattttgttggtttcaaacacaacttgtatccatgacaatcttgttgactaaaagatatatgta |
300 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50392623 |
agttaataaattactaattaaattttttatttatcaaattttgttggtttcaaacacaacttgtatccatgacaatcttgttgactaaaagatatatgta |
50392722 |
T |
|
| Q |
301 |
taagagatagaactcatgattaatttatcctattgtttgctgactcatcaaaataaaagaaattgatagcaattttaatttctgtctccatctctctcta |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50392723 |
taagagatagaactcatgattaatttatcctattgtttgctgactcatcaaaataaaagaaattgatagcaattttaatttctgtctccatctctctcta |
50392822 |
T |
|
| Q |
401 |
tttaattgaacatacctcatttataacagcagttcacagctgcagagctactgctaaaactaaaactaagtagtaagca |
479 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50392823 |
tttaattgaacatacctcatttataacagcagttcacagctgcagagctactgctaaaactaaaactaagtagtaagca |
50392901 |
T |
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