View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15969_low_10 (Length: 264)
Name: NF15969_low_10
Description: NF15969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15969_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 39200094 - 39199849
Alignment:
| Q |
1 |
tcatcagagcttggtagcttgattcctccagagattgaatccattagagtttgttctcatcacagtcttcgagatatcttttaatcagaattttaacttt |
100 |
Q |
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| T |
39200094 |
tcatcagagcttggtggcttgattcctccagaggttgaatccattagagtttgttctcatcagagtcttcgagatatcttttaatcagaattttaacttt |
39199995 |
T |
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| Q |
101 |
atgttgaccattcttcaaattatcttccaagtctttagaagttttcaatgnnnnnnnnagtaccataatgcttttcttgtgcttagaacttgatgtatca |
200 |
Q |
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| T |
39199994 |
atgttgaccattcttcaaattatcttccaagtctttagaagttttcaatgttttttttagtaccataatgcttttcttgtgctcagaacttgatgtatca |
39199895 |
T |
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| Q |
201 |
gaaccaaaaacttgatattgatgtca-aatttaattatatggtcat |
245 |
Q |
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| T |
39199894 |
gaaccaaaaacttgatattgatgtcagaatttaattatatggtcat |
39199849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 39227705 - 39227480
Alignment:
| Q |
16 |
agcttgattcctccagagattgaatccattagagtttgttctcatcacagtcttcgagatatcttttaatcagaattttaactttatgttgaccattctt |
115 |
Q |
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| T |
39227705 |
agcttgcttccttcagaggttcaatccatctgagtttgttctcattagagtcttcacg-tatcttctaatcagaactttgactttatgttaaccgttctt |
39227607 |
T |
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| Q |
116 |
caaattatcttccaagtctttagaagttttcaatgnnnnnnnnagtaccataatgcttttcttgtgcttagaacttgatgtatcagaaccaaaaacttga |
215 |
Q |
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| T |
39227606 |
caaattatgttccaagtctttggaagttttcaatg-tttttttagtaccataatgttttttttgtgctcaaaacttgatgtatcaaaacc---aacttga |
39227511 |
T |
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| Q |
216 |
tattgatgtca-aatttaattatatggtcat |
245 |
Q |
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| T |
39227510 |
tcttaaagttataatttaattatatggtcat |
39227480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 14761198 - 14761267
Alignment:
| Q |
159 |
agtaccataatgcttttcttgtgcttagaacttgatgtatcagaaccaaaaacttgatattgatgtcaaa |
228 |
Q |
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| T |
14761198 |
agtacgataatgctttccttgtgctcagaacttgatgtatctaaaccaaaaacttgactttgaagtcaaa |
14761267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 22881632 - 22881688
Alignment:
| Q |
159 |
agtaccataatgcttttcttgtgcttagaacttgatgtatcagaaccaaaaacttga |
215 |
Q |
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| T |
22881632 |
agtaccataacgttttccttgtgcccagaacttgatgtatcagaaccaaaaacttga |
22881688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 35512005 - 35511952
Alignment:
| Q |
161 |
taccataatgcttttc-ttgtgcttagaacttgatgtatcagaaccaaaaactt |
213 |
Q |
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| T |
35512005 |
taccataatgcttttcattgtcctcagaacttgatgtataagaaccaaaaactt |
35511952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 22669183 - 22669116
Alignment:
| Q |
177 |
ttgtgcttagaacttgatgtatcagaaccaaaaacttgatattgatgtc-aaatttaattatatggtc |
243 |
Q |
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| T |
22669183 |
ttgtgctcaaaatttgatgtatcataaccaaaaacttgaccttgaagtcaaaatttaattatatggtc |
22669116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 12900449 - 12900384
Alignment:
| Q |
84 |
atcagaattttaactttat-gttgaccattcttcaaattatcttccaagtctttagaagttttcaa |
148 |
Q |
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| T |
12900449 |
atcagaactttaacttttttgttgacctttcttcagatcatcttctaagtctttagaagtcttcaa |
12900384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 16404253 - 16404195
Alignment:
| Q |
92 |
tttaactttatgttgaccattcttcaaattatcttccaagtctttagaagttttcaatg |
150 |
Q |
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| T |
16404253 |
tttaactttttgttgacctttcttcagatcatcttctaagtttttagaagtttccaatg |
16404195 |
T |
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