View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15969_low_15 (Length: 211)
Name: NF15969_low_15
Description: NF15969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15969_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 37841979 - 37842156
Alignment:
| Q |
19 |
aacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatgga |
118 |
Q |
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| T |
37841979 |
aacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctgacatacattaatctgtcaagga |
37842078 |
T |
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| Q |
119 |
acaaatttgcacgacatataccatcagagttgggaaacctattgaatattgtgattttggaactttctcacaataact |
196 |
Q |
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| T |
37842079 |
acaaatttgcacgacttataccatcagagttgggaaacctattgaatcttgtgattttggaactttctcacaacaact |
37842156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 37830656 - 37830831
Alignment:
| Q |
19 |
aacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatgga |
118 |
Q |
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| T |
37830656 |
aacctgaaatacatggacataagcaaaaacaatattggtggaccaattacatcaagtttgggaaattgcacaaatctcgcatacattaatttgtcaagaa |
37830755 |
T |
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| Q |
119 |
acaaatttgcacgacatataccatcagagttgggaaacctattgaatattgtgattttggaactttctcacaataa |
194 |
Q |
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| T |
37830756 |
acaaatttgcaggactcataccattacagcttggaaaccttgtgaatcttgtgattttggatcttgctcacaataa |
37830831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 37849733 - 37849907
Alignment:
| Q |
17 |
tgaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatg |
116 |
Q |
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| T |
37849733 |
tgaacctgaaatacatggacatgagtaagaacaaaatcagtggacggattccatcaagtttgggaaattgcacaaatcttacatacattaatttgtcaag |
37849832 |
T |
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| Q |
117 |
gaacaaatttgcacgacatataccatcagagttgggaaacctattgaatattgtgattttggaactttctcacaa |
191 |
Q |
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| T |
37849833 |
gaacaaatttgcacggctcataccatcacagctgggaaaccttgtaaaccttgtgattttggatctttctaacaa |
37849907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 37836358 - 37836537
Alignment:
| Q |
17 |
tgaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctcacatacataaatttatcatg |
116 |
Q |
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| T |
37836358 |
tgaacctgaactacatggacttgagcaagaacaatatcagtggaccagttccatcaagtttgggaaattgcaaaaatctcacatacagtaatttgtcgag |
37836457 |
T |
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| Q |
117 |
gaacaaatttgcacgacatataccatcagagttgggaaacctattgaatattgtgattttggaactttctcacaataact |
196 |
Q |
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| T |
37836458 |
gaacaattttgcagggctcatatcgacagagttaggtaagcttgtgagtcttgtgattttggatctttctcacaacaact |
37836537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 36865108 - 36865288
Alignment:
| Q |
16 |
atgaacctgaaatacatggacataagcaagaacaatatcagcgggccaattccatcgagtttgggaaattgcacaaatctcacatacataaatttatcat |
115 |
Q |
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||||||||||||||||||||||| |||||||||| |||| | || || || ||||| ||||||||||||| ||| ||||| |||||||| ||||| ||| |
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| T |
36865108 |
atgaacctgaaatacatggacatgagcaagaacagtatcggtggaccgataccatcaagtttgggaaattacactaatcttacatacattaatttgtcaa |
36865207 |
T |
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| Q |
116 |
ggaacaaatttgcacgacatataccatcagagttgggaaacctattgaatattgtgattttggaactttctcacaataact |
196 |
Q |
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| |||||||||||| | | ||||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||| |||| |
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| T |
36865208 |
gcaacaaatttgcagggctcataccattagagctgggaaaccttgtgaatcttgtgattttggatctttctcacaacaact |
36865288 |
T |
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