View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15969_low_3 (Length: 448)

Name: NF15969_low_3
Description: NF15969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15969_low_3
NF15969_low_3
[»] chr7 (6 HSPs)
chr7 (1-433)||(23940245-23940681)
chr7 (277-373)||(24992521-24992617)
chr7 (306-377)||(36309499-36309570)
chr7 (277-360)||(2016904-2016987)
chr7 (331-373)||(8235019-8235061)
chr7 (315-373)||(23472397-23472455)
[»] chr8 (5 HSPs)
chr8 (275-433)||(6863022-6863180)
chr8 (285-368)||(39785586-39785669)
chr8 (277-368)||(34018248-34018339)
chr8 (297-377)||(33474223-33474303)
chr8 (335-373)||(7664018-7664056)
[»] chr5 (4 HSPs)
chr5 (277-368)||(33155612-33155703)
chr5 (309-383)||(2818964-2819038)
chr5 (277-324)||(3769928-3769975)
chr5 (303-373)||(29491886-29491956)
[»] chr1 (7 HSPs)
chr1 (277-373)||(46014490-46014586)
chr1 (280-373)||(41625473-41625566)
chr1 (277-373)||(39742508-39742604)
chr1 (338-373)||(7890424-7890459)
chr1 (282-349)||(42713791-42713858)
chr1 (277-365)||(7890245-7890333)
chr1 (287-315)||(33004326-33004354)
[»] chr3 (6 HSPs)
chr3 (277-369)||(40386281-40386373)
chr3 (287-374)||(49995005-49995092)
chr3 (313-413)||(20753206-20753305)
chr3 (303-426)||(33125978-33126100)
chr3 (338-383)||(42347356-42347401)
chr3 (341-377)||(9586370-9586406)
[»] chr2 (4 HSPs)
chr2 (277-383)||(4522322-4522428)
chr2 (334-376)||(19513992-19514034)
chr2 (280-372)||(42206071-42206163)
chr2 (330-383)||(43931740-43931793)
[»] chr4 (3 HSPs)
chr4 (277-376)||(6365176-6365275)
chr4 (340-434)||(8482382-8482475)
chr4 (306-383)||(34113644-34113721)
[»] chr6 (3 HSPs)
chr6 (304-373)||(2188708-2188777)
chr6 (277-377)||(957210-957309)
chr6 (335-371)||(10912283-10912319)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 23940245 - 23940681
Alignment:
Q  1 caatacattattcaaactccatagttaattctggttgctgtggaaattgcaaccttccattcaattgaggatcagtcagatgcatcagaccttaaatatg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23940245 caatacattattcaaactccatagttaattctgcttgctgtggaaattgcaaccttccattcaattgaggatcagtcagatgcatcagaccttaaatatg 23940344  T
Q  101 aagaagcatggaggtattagtttaggagttaaggactttgtcagtgacaatgccattaagtggtaaatttgagtaagtacaattttcaagtaccaatgct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23940345 aagaagcatggaggtattagtttaggagttaaggactttgtcagtgataatgccattaagtggtaaatttgagtaagtacaattttcaagtaccaatgct 23940444  T
Q  201 caaattgtttgtagtgctttctaagacggagaaatgtcacatatgatttatggtggttcgatatttgaactgaacaaattctatgatgcacaagtgagat 300  Q
    ||||||||| |||||| |||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23940445 caaattgttcgtagtggtttcaaagacgtagaagtgtcacatatgatttatggtggttcgatatttgaactggacaaattctatgatgcacaagtgagat 23940544  T
Q  301 atgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataatgcgacttctttgatcaaaggatgg 400  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | ||    
T  23940545 atgtcttgcatcatgcacaagctacttttcatcgttagatcaataaatctcaccattaaattaaatgaaatataatacgacttttttgatcaaagaaagg 23940644  T
Q  401 aaaatacatttg----tggatagtgcaagaccatttt 433  Q
    |||||| |||||    ||||| |||||||||||||||    
T  23940645 aaaatatatttgtgaatggatggtgcaagaccatttt 23940681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 277 - 373
Target Start/End: Complemental strand, 24992617 - 24992521
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    |||| ||||||||||||| |||| || ||||||||||| ||||||||| |||| ||| |  |||||||||||| ||||| |||||||||||||||||    
T  24992617 aattatatgatgcacaagcgagaaatatcttgcatcatacacaagttagtttctatcatcggatcaataaatcacaccactaaattaaatgaaatat 24992521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 377
Target Start/End: Original strand, 36309499 - 36309570
Alignment:
Q  306 ttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataatg 377  Q
    |||||||||||||||  |  |||||| |||||||||||| |||||| || ||||||||||| ||||||||||    
T  36309499 ttgcatcatgcacaaagttgtttccaccgttagatcaattaatctccccgttaaattaaataaaatataatg 36309570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 360
Target Start/End: Complemental strand, 2016987 - 2016904
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaa 360  Q
    |||| |||| ||||||||||||||| |||||| ||||||| ||| ||| ||| || | ||  |||||||||| |||||||||||    
T  2016987 aattatatggtgcacaagtgagataagtcttgtatcatgcgcaaattaattttcaacattcaatcaataaatttcaccattaaa 2016904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 373
Target Start/End: Original strand, 8235019 - 8235061
Alignment:
Q  331 atcgttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    |||||| |||||||||||||||| ||| |||||||||||||||    
T  8235019 atcgtttgatcaataaatctcactatttaattaaatgaaatat 8235061  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 23472455 - 23472397
Alignment:
Q  315 gcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    |||||| ||| ||| |||| || |||||||||||||||||||||||| |||||| ||||    
T  23472455 gcacaacttaattttcatcatttgatcaataaatctcaccattaaatcaaatgatatat 23472397  T

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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 275 - 433
Target Start/End: Original strand, 6863022 - 6863180
Alignment:
Q  275 caaattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatata 374  Q
    |||||||| || |||| |||||||| | |||||||||||| |||||| || |||||| | || ||||||||||||||||||||||||||||||||||||     
T  6863022 caaattctctggtgcataagtgagacaagtcttgcatcatacacaagctagtttccaccattggatcaataaatctcaccattaaattaaatgaaatatg 6863121  T
Q  375 atgcgacttctttgatcaaaggatggaaaatacatttgtggatagtgcaagaccatttt 433  Q
    ||| ||||| ||| ||| || | |||||||  || ||||| || |||||||||||||||    
T  6863122 atgtgactttttttatctaatggtggaaaaggcacttgtgcatggtgcaagaccatttt 6863180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 39785586 - 39785669
Alignment:
Q  285 gatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatga 368  Q
    ||||||||||||||| | ||||||||||||||| ||| || ||| || | || |||||||||||| ||| ||||||||||||||    
T  39785586 gatgcacaagtgagacaagtcttgcatcatgcataagctagttttcaccattggatcaataaatcccacaattaaattaaatga 39785669  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 34018339 - 34018248
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatga 368  Q
    ||||||| | |||| |||||||| | ||||||||||||||||||| || |||  | | || |||||||||||  ||||||||||||||||||    
T  34018339 aattctaaggtgcataagtgagacaagtcttgcatcatgcacaagctagtttttaccattggatcaataaattccaccattaaattaaatga 34018248  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 377
Target Start/End: Original strand, 33474223 - 33474303
Alignment:
Q  297 agatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataatg 377  Q
    ||||| ||||||||||||| ||||| |  ||| || | || ||||||||| | ||||||||||||||||| ||||||||||    
T  33474223 agataagtcttgcatcatgtacaaggttgttttcaccatttgatcaataagtttcaccattaaattaaataaaatataatg 33474303  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 373
Target Start/End: Complemental strand, 7664056 - 7664018
Alignment:
Q  335 ttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  7664056 ttagatcaaaaaatctccccattaaattaaatgaaatat 7664018  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 33155703 - 33155612
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatga 368  Q
    ||||||| | ||||||||||||| | ||||||||||||||||||| || ||| || | || |||||||||||| ||||||||||||||||||    
T  33155703 aattctaaggtgcacaagtgagacaagtcttgcatcatgcacaagctagttttcaccattggatcaataaatcccaccattaaattaaatga 33155612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 383
Target Start/End: Original strand, 2818964 - 2819038
Alignment:
Q  309 catcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataatgcgactt 383  Q
    |||||| ||||||||| ||| |||| || ||||||||||||||||||||| |||||||||||||| |||| ||||    
T  2818964 catcatacacaagttagttttcatcattggatcaataaatctcaccattagattaaatgaaatatgatgcaactt 2819038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 3769975 - 3769928
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagtta 324  Q
    ||||||||| ||||||||||| | | ||||||||||||||||||||||    
T  3769975 aattctatggtgcacaagtgaaacaagtcttgcatcatgcacaagtta 3769928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 373
Target Start/End: Original strand, 29491886 - 29491956
Alignment:
Q  303 gtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    |||||| |||||| | |||||| ||||||||  || ||||||||||||| ||||| |||||||| ||||||    
T  29491886 gtcttgaatcatgaataagttagtttccatcaatacatcaataaatctctccatttaattaaataaaatat 29491956  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 373
Target Start/End: Original strand, 46014490 - 46014586
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    |||| ||||||||||||||||||||||||||| |||||| ||||| || ||| |||| |||||||||| ||||  || |||||||| ||||| ||||    
T  46014490 aattatatgatgcacaagtgagatatgtcttgtatcatgtacaagctagttttcatcattagatcaatgaatccaactattaaatttaatgagatat 46014586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 373
Target Start/End: Original strand, 41625473 - 41625566
Alignment:
Q  280 tctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    |||||| |||||| |  ||||| |||||||| |||||||||| | ||||||| | |||||||||||||| |||| |||||||||||| ||||||    
T  41625473 tctatggtgcacatgcaagataagtcttgcaccatgcacaagattctttccaccattagatcaataaatttcactattaaattaaataaaatat 41625566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 373
Target Start/End: Original strand, 39742508 - 39742604
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    ||||||||||||| ||||||||| |   | ||||||||| ||||  || |||  | | ||||||||||||||| |||||||||||||||||||||||    
T  39742508 aattctatgatgcccaagtgagacaaaccctgcatcatgtacaaactagtttttacccttagatcaataaatcccaccattaaattaaatgaaatat 39742604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 373
Target Start/End: Original strand, 7890424 - 7890459
Alignment:
Q  338 gatcaataaatctcaccattaaattaaatgaaatat 373  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7890424 gatcaataaatttcaccattaaattaaatgaaatat 7890459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 42713858 - 42713791
Alignment:
Q  282 tatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatc 349  Q
    |||| ||||||| ||||||| || ||||||||||||||||||| ||||||   || ||||||||||||    
T  42713858 tatggtgcacaaatgagataagttttgcatcatgcacaagttattttccacaattcgatcaataaatc 42713791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 365
Target Start/End: Original strand, 7890245 - 7890333
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaa 365  Q
    |||||||||||||||||   ||| | ||||||||||||||||||  || ||| || | ||  |||||||||| |||||| |||||||||    
T  7890245 aattctatgatgcacaaccaagacaagtcttgcatcatgcacaaactaattttcacccttgaatcaataaatttcaccactaaattaaa 7890333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 33004354 - 33004326
Alignment:
Q  287 tgcacaagtgagatatgtcttgcatcatg 315  Q
    |||||||||||||||||||||||||||||    
T  33004354 tgcacaagtgagatatgtcttgcatcatg 33004326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 369
Target Start/End: Original strand, 40386281 - 40386373
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaa 369  Q
    ||||||||| ||||||||||  | | || ||||||||||||||||  | |||||| | || |||||||||||||||| |||||||||||||||    
T  40386281 aattctatggtgcacaagtgtaacaagttttgcatcatgcacaagccagtttccaccattggatcaataaatctcactattaaattaaatgaa 40386373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 374
Target Start/End: Complemental strand, 49995092 - 49995005
Alignment:
Q  287 tgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatata 374  Q
    ||||||||||||| | |||||||||||||||||| ||| |||    | ||| ||| ||||||  ||||||||||||||||||||||||    
T  49995092 tgcacaagtgagacaagtcttgcatcatgcacaaattagtttttgacattacatcgataaattccaccattaaattaaatgaaatata 49995005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 20753206 - 20753305
Alignment:
Q  313 atgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataatgcgacttctttgatcaaaggatggaaaatacatttg 412  Q
    ||||| ||| || |||||||| |  ||||||||||||||| | |||||| ||||||||||||||| ||||| ||||| | || | ||||||| |||||||    
T  20753206 atgcataagctagtttccatcatcggatcaataaatctcatcgttaaatgaaatgaaatataatgtgactt-tttgaaccaatggtggaaaagacatttg 20753304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 426
Target Start/End: Complemental strand, 33126100 - 33125978
Alignment:
Q  303 gtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataatgcgacttctttgatcaaaggatggaa 402  Q
    |||||||| ||| ||||| ||| ||| ||||||  ||||||||||  ||||||||||||||| ||| ||| |||| |||||  |||||| || |||| ||    
T  33126100 gtcttgcaccatacacaaattagttttcatcgtcggatcaataaagttcaccattaaattaactgagataaaatgtgactt-attgatctaatgatgaaa 33126002  T
Q  403 aatacatttgtggatagtgcaaga 426  Q
    || ||||| ||| || ||||||||    
T  33126001 aagacattcgtgtatggtgcaaga 33125978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 383
Target Start/End: Original strand, 42347356 - 42347401
Alignment:
Q  338 gatcaataaatctcaccattaaattaaatgaaatataatgcgactt 383  Q
    ||||||||||||||| |||||||||| |||| |||| |||||||||    
T  42347356 gatcaataaatctcatcattaaattatatgagatatgatgcgactt 42347401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 377
Target Start/End: Complemental strand, 9586406 - 9586370
Alignment:
Q  341 caataaatctcaccattaaattaaatgaaatataatg 377  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  9586406 caataaaactcactattaaattaaatgaaatataatg 9586370  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 383
Target Start/End: Complemental strand, 4522428 - 4522322
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataat 376  Q
    ||||||||| |||| |||| ||||| |||||||||||||||||| ||| ||||||||  | |||||||||  ||||||| || || |||||| |||| ||    
T  4522428 aattctatggtgcaaaagtaagataagtcttgcatcatgcacaaattagtttccatcactggatcaataagcctcaccagtagatcaaatgagatatgat 4522329  T
Q  377 gcgactt 383  Q
    | |||||    
T  4522328 gggactt 4522322  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 376
Target Start/End: Original strand, 19513992 - 19514034
Alignment:
Q  334 gttagatcaataaatctcaccattaaattaaatgaaatataat 376  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  19513992 gttagatcaataaatctcatcattaaattaaatgaaatataat 19514034  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 372
Target Start/End: Original strand, 42206071 - 42206163
Alignment:
Q  280 tctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaata 372  Q
    |||||| |||||||  || |||||||||||| |||||||||| |  |||| | |  ||||||||||| || |||| |||||||||||||||||    
T  42206071 tctatggtgcacaaaagacatatgtcttgcaccatgcacaaggttttttctaccaatagatcaataagtcgcaccgttaaattaaatgaaata 42206163  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 43931793 - 43931740
Alignment:
Q  330 catcgttagatcaataaatctcaccattaaattaaatgaaatataatgcgactt 383  Q
    |||| |||||| |||||||||||||||||||| |||||| |||| ||| |||||    
T  43931793 catcattagatgaataaatctcaccattaaatcaaatgatatatgatgtgactt 43931740  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 376
Target Start/End: Original strand, 6365176 - 6365275
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataat 376  Q
    |||| |||| |||| |||||| | | ||||||||||||||| | |||| |||  ||| || ||||||||||| |||| |||||||||||| | |||||||    
T  6365176 aattatatggtgcataagtgaaacacgtcttgcatcatgcatatgttaatttttatcattggatcaataaatttcactattaaattaaataagatataat 6365275  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 434
Target Start/End: Original strand, 8482382 - 8482475
Alignment:
Q  340 tcaataaatctcaccattaaattaaatgaaatataatgcgacttctttgatcaaaggatggaaaatacatttgtggatagtgcaagaccattttt 434  Q
    ||||||||| |||||||||||||||||||||||| |   ||||| ||||||| || | ||||  | ||  ||||| |||||||||||||||||||    
T  8482382 tcaataaatttcaccattaaattaaatgaaatatgacatgactt-tttgatctaatggtggatcagacgcttgtgcatagtgcaagaccattttt 8482475  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 34113644 - 34113721
Alignment:
Q  306 ttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataatgcgactt 383  Q
    |||||||||| | |||||| |||  ||| ||  ||||||||||||||| |||||||||||||| |||| ||| |||||    
T  34113644 ttgcatcatgtataagttagtttttatcattgaatcaataaatctcactattaaattaaatgatatatgatgtgactt 34113721  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 373
Target Start/End: Original strand, 2188708 - 2188777
Alignment:
Q  304 tcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatat 373  Q
    |||||||||||| | ||| || |||| | | || ||||||||||||| || |||||||||||||||||||    
T  2188708 tcttgcatcatgtagaagctagtttctacctttggatcaataaatcttacaattaaattaaatgaaatat 2188777  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 957309 - 957210
Alignment:
Q  277 aattctatgatgcacaagtgagatatgtcttgcatcatgcacaagttactttccatcgttagatcaataaatctcaccattaaattaaatgaaatataat 376  Q
    ||||||||||| ||||||||||| |  |||||||| ||| | |||||| |||  |   ||||||||| ||| |||||||||||||| ||||| |||||||    
T  957309 aattctatgatacacaagtgagacaaatcttgcattatgtataagttagtttttacaattagatcaa-aaacctcaccattaaatttaatgagatataat 957211  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 371
Target Start/End: Original strand, 10912283 - 10912319
Alignment:
Q  335 ttagatcaataaatctcaccattaaattaaatgaaat 371  Q
    |||||||||| |||||||| |||||||||||||||||    
T  10912283 ttagatcaattaatctcacaattaaattaaatgaaat 10912319  T

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