View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15969_low_4 (Length: 411)

Name: NF15969_low_4
Description: NF15969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15969_low_4
NF15969_low_4
[»] chr2 (8 HSPs)
chr2 (23-399)||(32716921-32717297)
chr2 (20-399)||(32716507-32716886)
chr2 (21-399)||(32716714-32717092)
chr2 (20-399)||(32717128-32717507)
chr2 (20-227)||(32716472-32716679)
chr2 (225-399)||(32717335-32717509)
chr2 (126-227)||(32714058-32714159)
chr2 (326-399)||(32714093-32714166)
[»] chr5 (5 HSPs)
chr5 (22-399)||(2998224-2998601)
chr5 (32-331)||(2997879-2998178)
chr5 (20-399)||(2998018-2998396)
chr5 (20-269)||(2997734-2997983)
chr5 (205-399)||(2998431-2998625)
[»] chr6 (5 HSPs)
chr6 (109-398)||(14905337-14905626)
chr6 (20-399)||(14904834-14905213)
chr6 (150-399)||(14904757-14905006)
chr6 (29-227)||(14905464-14905662)
chr6 (20-298)||(14905041-14905319)
[»] chr8 (8 HSPs)
chr8 (164-260)||(34916677-34916773)
chr8 (165-260)||(34534115-34534210)
chr8 (149-227)||(34544942-34545020)
chr8 (165-260)||(38454144-38454239)
chr8 (165-227)||(39848031-39848093)
chr8 (168-254)||(39848865-39848951)
chr8 (354-399)||(34544940-34544985)
chr8 (359-399)||(34549278-34549318)
[»] chr3 (1 HSPs)
chr3 (166-227)||(7046903-7046964)
[»] chr4 (1 HSPs)
chr4 (176-226)||(44474135-44474185)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 23 - 399
Target Start/End: Complemental strand, 32717297 - 32716921
Alignment:
Q  23 aaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaaagt 122  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32717297 aaagatcactctcgaagttaccaatgtagatatccccatcagattttttaagggtgccgtgaccatgacgggaattcccggagaattcaccctcaaaagt 32717198  T
Q  123 tgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttg 222  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32717197 tgatcctgatggatatatgatctgacctttcccagtcattcttccatcaacccaatcaccctcgtatatttctccatctggccatgtgtactttcccttg 32717098  T
Q  223 ccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgaccct 322  Q
    |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32717097 ccattgaaaagatcactcttgaagttaccaatgtagacatgcccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgaccct 32716998  T
Q  323 caaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32716997 caaaacttgttcctgatagatatatcatttgccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 32716921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 32716886 - 32716507
Alignment:
Q  20 ggaaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaa 119  Q
    ||||||||||||||||||||||||||| |||||||  |||||  ||||||||||| ||||||||||||||||||||||||||  |||||| |||||||||    
T  32716886 ggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgtgaccatgacgggaattcctaaagaattgaccctcaaa 32716787  T
Q  120 agttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccc 219  Q
    | ||| |||||||||||||||||||||  ||||||| ||| || ||||||||| |||||||||||| ||||||  ||||| |  ||| ||||||||||||    
T  32716786 acttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttaaccacgtgtactttccc 32716687  T
Q  220 ttgccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgac 319  Q
    |||||||||||||||| ||||| ||||||||||| |||||     |||| |||| |  |||| |||||  ||||||||||||||||||||||||||||||    
T  32716686 ttgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgcgaccatgacgggaattcctaaagaattgac 32716587  T
Q  320 cctcaaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    |||||||||||| ||||||| ||||||| ||   |||||||||||||||| ||||||||||||||||||| || ||||||    
T  32716586 cctcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatatt 32716507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 21 - 399
Target Start/End: Complemental strand, 32717092 - 32716714
Alignment:
Q  21 gaaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaaa 120  Q
    |||||||||||||| ||||||||||||||||| || |||||| ||| |  |||||||||| ||||||||||||||||||||  |||||| ||||||||||    
T  32717092 gaaaagatcactcttgaagttaccaatgtagacatgcccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgaccctcaaaa 32716993  T
Q  121 gttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccct 220  Q
     ||| ||||||| ||||||| ||  |  ||||||| ||| |||||||||||| ||||||||| |||||||||  ||||| || ||||||||||||||| |    
T  32716992 cttgttcctgatagatatatcatttgccctttccctgtccttcttccatcaacccaatcaccatcgtatattgttccatgtgaccatgtgtactttcctt 32716893  T
Q  221 tgccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgacc 320  Q
    ||||||||||||||| ||||| ||||||||||| |||||     |||| |||| |  |||| ||||| ||||||||||||||||||||||||||||||||    
T  32716892 tgccatggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgtgaccatgacgggaattcctaaagaattgacc 32716793  T
Q  321 ctcaaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    ||||||||||| ||||||| ||||||| ||   |||||||||||||||| ||||||||||||||||||| || ||||||    
T  32716792 ctcaaaacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatatt 32716714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 32717507 - 32717128
Alignment:
Q  20 ggaaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaa 119  Q
    ||||||||| |||||||  |||| || ||||||  | ||| || |||||| || | || ||||||||||||  ||||||||| |||||||||||||||||    
T  32717507 ggaaaagattactctcggtgttatcactgtagacttccccgtttgattttgtatgagttccgtgaccatgaaaggaattcctagagaattcaccctcaaa 32717408  T
Q  120 agttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccc 219  Q
    | ||| ||||||||||||||| |||||  ||||||| ||| |||||||||||| |||||||||||||||||||  |||||||  |||||||||||||||     
T  32717407 acttgctcctgatggatatattatccgtcctttccctgtccttcttccatcaacccaatcaccctcgtatattgttccatctaaccatgtgtactttcct 32717308  T
Q  220 ttgccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgac 319  Q
    ||||||||| |||||| ||||| |||||||||||||||||  |  ||||  ||| |  |||||||||| |||||||||||||||||||   |||||| ||    
T  32717307 ttgccatggtaaagatcactctcgaagttaccaatgtagatatccccatcagattttttaagggtgccgtgaccatgacgggaattcccggagaattcac 32717208  T
Q  320 cctcaaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    |||||||| ||| ||||||| ||||||| || |  |||||||| ||| |||||||||||||||||||||| |||||||||    
T  32717207 cctcaaaagttgatcctgatggatatatgatctgacctttcccagtcattcttccatcaacccaatcaccctcgtatatt 32717128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 32716679 - 32716472
Alignment:
Q  20 ggaaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaa 119  Q
    ||||||||||||||||||||||||||| |||||||  |||||  ||||||||||| |||||| |||||||||||||||||||  |||||| |||||||||    
T  32716679 ggaaaagatcactctcgaagttaccaacgtagatacccccatcggattttttaagagtgccgcgaccatgacgggaattcctaaagaattgaccctcaaa 32716580  T
Q  120 agttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccc 219  Q
    | ||| |||||||||||||||||||||  ||||||| ||| || ||||||||| |||||||||||| ||||||  ||||| || ||||||||||||||||    
T  32716579 acttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatgtgtactttccc 32716480  T
Q  220 ttgccatg 227  Q
    ||||||||    
T  32716479 ttgccatg 32716472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 225 - 399
Target Start/End: Complemental strand, 32717509 - 32717335
Alignment:
Q  225 atggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgaccctca 324  Q
    ||||||||||||||||| |  |||| || |||||||||  || || ||| | ||| | || || |||||||||  |||||||||| |||||| |||||||    
T  32717509 atggaaaagattactctcggtgttatcactgtagacttccccgtttgattttgtatgagttccgtgaccatgaaaggaattcctagagaattcaccctca 32717410  T
Q  325 aaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    ||||||| ||||||| ||||||| ||    ||||||||||||||||||||||||||||||||||| |||||||||    
T  32717409 aaacttgctcctgatggatatattatccgtcctttccctgtccttcttccatcaacccaatcaccctcgtatatt 32717335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 32714159 - 32714058
Alignment:
Q  126 tcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgcca 225  Q
    |||||||||||||||||||||  ||||||| ||| || ||||||||| |||||||||||| ||||||  ||||| || ||||||||||||||||||||||    
T  32714159 tcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatattgttccatttgaccatgtgtactttcccttgcca 32714060  T
Q  226 tg 227  Q
    ||    
T  32714059 tg 32714058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 32714166 - 32714093
Alignment:
Q  326 aacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    |||||| ||||||| ||||||| ||   |||||||||||||||| ||||||||||||||||||| || ||||||    
T  32714166 aacttgctcctgatggatatatgatccgccctttccctgtcctttttccatcaacccaatcaccctcatatatt 32714093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 22 - 399
Target Start/End: Complemental strand, 2998601 - 2998224
Alignment:
Q  22 aaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaaag 121  Q
    |||| |||| ||||||||||||||| |||||||| |||||| |||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||||||     
T  2998601 aaaatatcattctcgaagttaccaacgtagatatccccattggattttgtaagggtgccgcgaccatgacgggagttcttggagaattcaccctcaaaaa 2998502  T
Q  122 ttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccctt 221  Q
    |||||||||||| ||||||||||||| ||||||| ||| |||||||||||| |||| |||||| |||||||  ||||| || |||  |||||||||| ||    
T  2998501 ttgatcctgatgaatatatgatccgacctttccctgtccttcttccatcaaaccaaccacccttgtatattgttccatttgaccacatgtactttccgtt 2998402  T
Q  222 gccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgaccc 321  Q
    ||||||||||||||   | | ||||||||||| |||||  |  |||| |||| | || |||||| | |||| ||||||||||||| |  |||||| ||||    
T  2998401 gccatggaaaagatcgttatcgaagttaccaacgtagatatccccatcggattttgtcagggtgtcgtgactatgacgggaattcatggagaattcaccc 2998302  T
Q  322 tcaaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    |||||||||||||||||| ||||||| ||    |||||||||||||||  | |||||||||||||||| || ||||||    
T  2998301 tcaaaacttgttcctgatggatatatgatccgtcctttccctgtcctttgttcatcaacccaatcaccctcatatatt 2998224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 32 - 331
Target Start/End: Complemental strand, 2998178 - 2997879
Alignment:
Q  32 tctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaaagttgatcctga 131  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||| ||| |  | |    
T  2998178 tctcaaagttaccaatgtagatatccccatcagattttttaagggtgccgtaaccattacgggaatttctcgagaattcaccctcaaaaattgtttttta 2998079  T
Q  132 tggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatggaaa 231  Q
    ||||||||| || ||  ||||||| |||  ||||||||||| |||||||||||| ||||||  ||||  || ||||||||||||||||||||||||||||    
T  2998078 tggatatattattcgtcctttccctgtccgtcttccatcaacccaatcaccctcatatattgttccacttgaccatgtgtactttcccttgccatggaaa 2997979  T
Q  232 agattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgaccctcaaaacttg 331  Q
    |||| | | |  |||||||||||| |||| |  ||||||||| | ||||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||    
T  2997978 agatcattttcaaagttaccaatgaagacatccccattggattttgtaagagtgccatgaccatgacgagaattcctaaagaattcaccctcaaaacttg 2997879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 2998396 - 2998018
Alignment:
Q  20 ggaaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaa 119  Q
    ||||||||||  | ||||||||||||| |||||||| |||||  |||||| | |||||| |||||| ||||||||||||| |||||||||||||||||||    
T  2998396 ggaaaagatcgttatcgaagttaccaacgtagatatccccatcggattttgtcagggtgtcgtgactatgacgggaattcatggagaattcaccctcaaa 2998297  T
Q  120 agttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccc 219  Q
    | ||| |||||||||||||||||||||  ||||||| ||| ||  | |||||| |||||||||||| ||||||  ||||| || |||||||| |||||||    
T  2998296 acttgttcctgatggatatatgatccgtcctttccctgtcctttgttcatcaacccaatcaccctcatatattgttccatttgaccatgtgtgctttccc 2998197  T
Q  220 ttgccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgac 319  Q
     |||||||||||| |||  |||  ||||||||||||||||  |  ||||  ||| |  |||||||||| | ||||| ||||||||| ||  |||||| ||    
T  2998196 -tgccatggaaaatattgttctcaaagttaccaatgtagatatccccatcagattttttaagggtgccgtaaccattacgggaatttctcgagaattcac 2998098  T
Q  320 cctcaaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    |||||||| |||||  | || ||||||| |||   ||||||||||||| ||||||||||||||||||||| || ||||||    
T  2998097 cctcaaaaattgttttttatggatatattattcgtcctttccctgtccgtcttccatcaacccaatcaccctcatatatt 2998018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 2997983 - 2997734
Alignment:
Q  20 ggaaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaa 119  Q
    ||||||||||| | || |||||||||||| ||| || |||||| |||||| |||| ||||| ||||||||||| ||||||||  ||||||||||||||||    
T  2997983 ggaaaagatcattttcaaagttaccaatgaagacatccccattggattttgtaagagtgccatgaccatgacgagaattcctaaagaattcaccctcaaa 2997884  T
Q  120 agttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccc 219  Q
    | ||| || ||| |||| ||||| | |  ||||||||||| || || ||| || |||||||||||| || |||  ||||  || ||||||||||||||||    
T  2997883 acttgctcttgacggatttatgaccggtcctttcccagtccttttttcattaacccaatcaccctcatagattgttccacttgaccatgtgtactttccc 2997784  T
Q  220 ttgccatggaaaagattactcttgaagttaccaatgtagacttggccatt 269  Q
    |||||||| ||||  || | ||| || |||||||||||||| || |||||    
T  2997783 ttgccatgaaaaaattttcccttaaaattaccaatgtagacatgcccatt 2997734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 399
Target Start/End: Complemental strand, 2998625 - 2998431
Alignment:
Q  205 catgtgtactttcccttgccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaat 304  Q
    ||||||||||||||||||||||| |||| || | ||| ||||||||||| |||||  |  ||||||||| | |||||||||||  ||||||||||||| |    
T  2998625 catgtgtactttcccttgccatgaaaaatatcattctcgaagttaccaacgtagatatccccattggattttgtaagggtgccgcgaccatgacgggagt 2998526  T
Q  305 tcctaaagaattgaccctcaaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    || |  |||||| |||||||||| ||| |||||||  |||||| ||    ||||||||||||||||||||||||| |||| |||| | |||||||    
T  2998525 tcttggagaattcaccctcaaaaattgatcctgatgaatatatgatccgacctttccctgtccttcttccatcaaaccaaccacccttgtatatt 2998431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 109 - 398
Target Start/End: Original strand, 14905337 - 14905626
Alignment:
Q  109 tcaccctcaaaagttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatg 208  Q
    ||||| |||||| ||| |||||||||||||| ||||||  |||| || |||||| |||| |||| ||| |||||||| ||||| |||||||||| |||||    
T  14905337 tcaccatcaaaatttgctcctgatggatataagatccgccctttacctgtcttttttccgtcaacccagtcaccctcatatatctctccatctgaccatg 14905436  T
Q  209 tgtactttcccttgccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcct 308  Q
    |||||||||||||||||||||||  |  |||||||||||||||||||||||  |  || |||||| | ||||||||||||||||||||||||||||||||    
T  14905437 tgtactttcccttgccatggaaagaaccactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttgaccatgacgggaattcct 14905536  T
Q  309 aaagaattgaccctcaaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatat 398  Q
    |||||||| |||||||||||||| ||||||| ||||||||||   ||||||||| ||||||  ||| |||||||| ||||| || |||||    
T  14905537 aaagaattcaccctcaaaacttgctcctgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatat 14905626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 20 - 399
Target Start/End: Original strand, 14904834 - 14905213
Alignment:
Q  20 ggaaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaa 119  Q
    ||||||||||| ||| ||||||||||||||||| || ||| || |||||| |||||||| ||||||||||||| ||||   |  ||||||||||||||||    
T  14904834 ggaaaagatcattcttgaagttaccaatgtagacatccccgttggattttataagggtgtcgtgaccatgacgagaatctttaaagaattcaccctcaaa 14904933  T
Q  120 agttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccc 219  Q
    | ||  |||||||||| |||| |||||  ||||||| |||||| ||||||||| ||| |||||||| ||||||| |||| ||| ||||||||||||||||    
T  14904934 actttctcctgatggaaatatcatccgccctttccctgtcttttttccatcaacccagtcaccctcatatatttgtccacctgaccatgtgtactttccc 14905033  T
Q  220 ttgccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgac 319  Q
    |||||||||||||||  | |||  ||||||||||| ||||  |  || |||||| | ||||||||| | || ||||||| |   ||| |  |||||  ||    
T  14905034 ttgccatggaaaagaccattctcaaagttaccaatatagagatccccgttggatcttgtaagggtgtcgtgtccatgactgatgttcattgagaatccac 14905133  T
Q  320 cctcaaaacttgttcctgatagatatatcattttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    |||||||||||| | ||||| || | ||||||   |||||||||||||| ||||||| |||||||||||| || ||||||    
T  14905134 cctcaaaacttgcttctgatggaaagatcattcgtcctttccctgtcctgcttccataaacccaatcaccctcatatatt 14905213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 150 - 399
Target Start/End: Original strand, 14904757 - 14905006
Alignment:
Q  150 tttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatggaaaagattactcttgaagtta 249  Q
    |||||| ||| |||||||||||| |||||||||||| ||||||| |||||  | ||||||||| ||||| |||||||||||||||| | |||||||||||    
T  14904757 tttccctgtccttcttccatcaacccaatcaccctcatatatttttccattcgaccatgtgtattttcctttgccatggaaaagatcattcttgaagtta 14904856  T
Q  250 ccaatgtagacttggccattggatatggtaagggtgccttgaccatgacgggaattcctaaagaattgaccctcaaaacttgttcctgatagatatatca 349  Q
    ||||||||||| |  || |||||| |  |||||||| | ||||||||||| ||||   ||||||||| |||||||||||||  ||||||| || ||||||    
T  14904857 ccaatgtagacatccccgttggattttataagggtgtcgtgaccatgacgagaatctttaaagaattcaccctcaaaactttctcctgatggaaatatca 14904956  T
Q  350 ttttccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    |   ||||||||||||| || ||||||||||||| ||||| || ||||||    
T  14904957 tccgccctttccctgtcttttttccatcaacccagtcaccctcatatatt 14905006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 227
Target Start/End: Original strand, 14905464 - 14905662
Alignment:
Q  29 cactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaaagttgatcc 128  Q
    |||||| ||||||||||||||||| |||||| || |||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| ||| |||    
T  14905464 cactcttgaagttaccaatgtagagattcccgttggattttgtaagggtgccttgaccatgacgggaattcctaaagaattcaccctcaaaacttgctcc 14905563  T
Q  129 tgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatg 227  Q
    |||||||||||| |||||  ||||||||||| ||  ||| |||| ||| |||||||| ||||| | |||||||| |||| ||||| |||| ||||||||    
T  14905564 tgatggatatatcatccgccctttcccagtcctttctccgtcaacccagtcaccctcatatatctgtccatctgaccatctgtacattcctttgccatg 14905662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 14905041 - 14905319
Alignment:
Q  20 ggaaaagatcactctcgaagttaccaatgtagatattcccattagattttttaagggtgccgtgaccatgacgggaattcctggagaattcaccctcaaa 119  Q
    |||||||| || |||| ||||||||||| |||| || ||| || ||| || |||||||| |||| ||||||| |   ||| | |||||| ||||||||||    
T  14905041 ggaaaagaccattctcaaagttaccaatatagagatccccgttggatcttgtaagggtgtcgtgtccatgactgatgttcattgagaatccaccctcaaa 14905140  T
Q  120 agttgatcctgatggatatatgatccgagctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttccc 219  Q
    | ||| | |||||||| | || || ||  ||||||| ||| | ||||||| || |||||||||||| ||||||||||| |||| ||||||| ||||||||    
T  14905141 acttgcttctgatggaaagatcattcgtcctttccctgtcctgcttccataaacccaatcaccctcatatatttctccctctgaccatgtgcactttccc 14905240  T
Q  220 ttgccatggaaaagattactcttgaagttaccaatgtagacttggccattggatatg-gtaagggtgccttgaccatgac 298  Q
    |||||||||||||||||| ||| ||||||||||| |||||| |  |||||||| ||| |||| |||||| ||||||||||    
T  14905241 ttgccatggaaaagattattctcgaagttaccaacgtagacatccccattgga-atgtgtaaaggtgccgtgaccatgac 14905319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 34916677 - 34916773
Alignment:
Q  164 ttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatggaaaagattactcttgaagttaccaatgtagac 260  Q
    ||||||||| ||| |||||||||||||||  ||||| || |||||||||||||||| ||||||||| ||| | || |||||| ||||||||||||||    
T  34916677 ttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttcccatgccatggagaagttcacccttgaatttaccaatgtagac 34916773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 34534115 - 34534210
Alignment:
Q  165 tccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatggaaaagattactcttgaagttaccaatgtagac 260  Q
    |||||||| |||||| ||||| ||||||  |||||||| |||||||||||| || ||||||||  |||| | || |||||||||||||||||||||    
T  34534115 tccatcaacccaatcgccctcatatattgttccatctgaccatgtgtacttcccgttgccatgacaaagttcacccttgaagttaccaatgtagac 34534210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 34544942 - 34545020
Alignment:
Q  149 ctttcccagtctttcttccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatg 227  Q
    ||||||| ||| || ||||||||| ||| |||||||||||||||  ||||| || |||||||||||||||  |||||||    
T  34544942 ctttccctgtcatttttccatcaacccagtcaccctcgtatattgttccatttgtccatgtgtactttccgatgccatg 34545020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 260
Target Start/End: Original strand, 38454144 - 38454239
Alignment:
Q  165 tccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatggaaaagattactcttgaagttaccaatgtagac 260  Q
    ||||||||||||||||||||| |||| |  ||||  || | ||||| ||||||| |||||||| ||||| | |  |||||||||||||| ||||||    
T  38454144 tccatcaatccaatcaccctcatatactgatccacatgacaatgtgaactttccgttgccatgaaaaagttcatccttgaagttaccaacgtagac 38454239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 39848093 - 39848031
Alignment:
Q  165 tccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatg 227  Q
    |||||||| |||||||||| | ||||||  |||||||| ||||||||||||||  ||||||||    
T  39848093 tccatcaacccaatcacccacatatattgatccatctgaccatgtgtactttcttttgccatg 39848031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 254
Target Start/End: Complemental strand, 39848951 - 39848865
Alignment:
Q  168 atcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatggaaaagattactcttgaagttaccaat 254  Q
    ||||| |||||||||||||||||||  ||||| ||    |||||| ||||| ||| |||||| ||| |||||| |||||||||||||    
T  39848951 atcaacccaatcaccctcgtatattgttccatttgagtgtgtgtattttccattgtcatggagaagtttactcctgaagttaccaat 39848865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Original strand, 34544940 - 34544985
Alignment:
Q  354 ccctttccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    ||||||||||||| || ||||||||||||| ||||| |||||||||    
T  34544940 ccctttccctgtcatttttccatcaacccagtcaccctcgtatatt 34544985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 34549278 - 34549318
Alignment:
Q  359 tccctgtccttcttccatcaacccaatcaccatcgtatatt 399  Q
    ||||||||||  ||||||||||||||||||| |||||||||    
T  34549278 tccctgtcctatttccatcaacccaatcaccctcgtatatt 34549318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 7046903 - 7046964
Alignment:
Q  166 ccatcaatccaatcaccctcgtatatttctccatctggccatgtgtactttcccttgccatg 227  Q
    |||||||||||||| ||||| ||||||  |||||||| ||||||||| ||||| ||||||||    
T  7046903 ccatcaatccaatctccctcatatattgatccatctgaccatgtgtagtttccgttgccatg 7046964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 44474185 - 44474135
Alignment:
Q  176 aatcaccctcgtatatttctccatctggccatgtgtactttcccttgccat 226  Q
    |||||||||| ||||||  |||||||| ||||||||||||||| |||||||    
T  44474185 aatcaccctcatatattgatccatctgaccatgtgtactttccgttgccat 44474135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University