View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15969_low_5 (Length: 352)
Name: NF15969_low_5
Description: NF15969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15969_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 27561473 - 27561778
Alignment:
| Q |
11 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccatt |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
27561473 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggaagtttgtgtgaataaccttcccact |
27561572 |
T |
|
| Q |
111 |
caatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttcttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27561573 |
caatttcgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttcgatcgcttcaactgtgtttccatcatccccatttcttt |
27561672 |
T |
|
| Q |
211 |
agataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27561673 |
agataaagctgaagatatcacacgaaactcagctttgatatcatttctccctaaaacgtttaatattgtaagaaatgaggagatccaaacgtacacactg |
27561772 |
T |
|
| Q |
311 |
caaatc |
316 |
Q |
| |
|
|||||| |
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|
| T |
27561773 |
caaatc |
27561778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 36668348 - 36668651
Alignment:
| Q |
15 |
gactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattcaat |
114 |
Q |
| |
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|||||||||||| ||||||| |||||||| |||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
36668348 |
gactcaaattatctagataactttctgtaaaagacctatcacaaagaaggtgagaaagaaaatgaaatggcagtttgtgtgaataaccttcccactcaat |
36668447 |
T |
|
| Q |
115 |
ttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag |
212 |
Q |
| |
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||| || | |||||||||||| ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36668448 |
ttctctcttagcgaatgtgctttcgcacgcaatgatacagcttcatgagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctttag |
36668547 |
T |
|
| Q |
213 |
ataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgca |
312 |
Q |
| |
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|||| |||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36668548 |
ataaggctgaagacatcacaccaaactcagctttgatatcttttctccctgaaacatttaatattgtaagaaatgaggagatccaaacatacacactgca |
36668647 |
T |
|
| Q |
313 |
aatc |
316 |
Q |
| |
|
|||| |
|
|
| T |
36668648 |
aatc |
36668651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 31707837 - 31707899
Alignment:
| Q |
254 |
tttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacactgcaaatc |
316 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
31707837 |
tttctccttgaaacatttaatattgtaagaaatgaggagatccaaacatacacactacaaatc |
31707899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 130 - 309
Target Start/End: Complemental strand, 36672887 - 36672707
Alignment:
| Q |
130 |
tgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccca-tttctttagataaagctgaagat-a |
227 |
Q |
| |
|
||||||||||| ||||| |||| ||| ||||||| |||||||||||| ||||||||| ||| ||||||| | ||| ||||||||||||| | ||| | |
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|
| T |
36672887 |
tgctttctcacacaatgatacaacttcaagagctacatctttccatcacttcaactgatcttctgtcatcccaattttttttagataaagct-atgatca |
36672789 |
T |
|
| Q |
228 |
tcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacact |
309 |
Q |
| |
|
||||||| |||||| |||||||| | |||||| | |||| | |||| ||||||||| ||||||| |||||||| ||||| |
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|
| T |
36672788 |
tcacacgtaactcaactttgatacctattctcctttaaacatgcaatactgtaagaaactaggagattcaaacatagacact |
36672707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 309
Target Start/End: Complemental strand, 27563519 - 27563358
Alignment:
| Q |
148 |
tacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatcccc-atttctttagataaagctgaagat-atcacacgaaactcagctt |
245 |
Q |
| |
|
|||| ||| |||||||||||| ||| ||| ||||||||| ||||||||||||| |||| ||||||||||||| ||||| ||||||| |||||| || |
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| T |
27563519 |
tacaacttcaagagctgcatccttctatcacttcaactgctcttccatcatccccgatttttttagataaagct-aagatcatcacacataactcaagtt |
27563421 |
T |
|
| Q |
246 |
tgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacact |
309 |
Q |
| |
|
|||||| | |||||||||||| | ||||| |||||||| || |||| |||||||||||||| |
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|
| T |
27563420 |
-gatatcttctctccctgaaacatgcaatatggtaagaaactagaagattcaaacatacacact |
27563358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 27561830 - 27561798
Alignment:
| Q |
320 |
gtggaagaggccaaagaggatactggtctgtat |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
27561830 |
gtggaagaggccaaagaggatactggtctgtat |
27561798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 12 - 316
Target Start/End: Complemental strand, 24202719 - 24202413
Alignment:
| Q |
12 |
acagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccattc |
111 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| || |
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|
| T |
24202719 |
acagactcaaattatctagataaattgctgtaaaagacctatcacaaagtcggtgacaaagaaaatgaaagggaactttgtgtgaataaccttcccactc |
24202620 |
T |
|
| Q |
112 |
aatttcgctg--aatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttctt |
209 |
Q |
| |
|
||||||||| | ||||||||||||||||||||| | ||| |||| ||| |||||||||| |||||||||||||||| |||||||| |||||||||| |
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|
| T |
24202619 |
aatttcgctcttagtgaatgtgctttctcacgcaaggatacggcttcaagtgctgcatcttctcatcgcttcaactgtgcatccatcattcccatttctt |
24202520 |
T |
|
| Q |
210 |
tagataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacact |
309 |
Q |
| |
|
||||||||| ||||| || |||||||||||| |||||||||| ||| |||||||||| |||||||||||||||| |||||||| |||||||| |||| |
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|
| T |
24202519 |
tagataaagttgaagccataacacgaaactcaactttgatatcttttgtccctgaaacatttaatattgtaagaaccaaggagatctaaacatactcact |
24202420 |
T |
|
| Q |
310 |
gcaaatc |
316 |
Q |
| |
|
||||||| |
|
|
| T |
24202419 |
gcaaatc |
24202413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 29410876 - 29411182
Alignment:
| Q |
11 |
cacagactcaaattatttagataaatttctgtacaagaccaatcacaaagtaggtgagaaagaaaatgaaagggcagtttgtgtgaataaccttcccatt |
110 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||| | ||| || |||||||||| ||| | |
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|
| T |
29410876 |
cacaaactcaaattatcaagatgaatttctgtaaaagacttatcacaaagtaggcgagaaagaaaatgaaagggtactttatgcgaataacctttccact |
29410975 |
T |
|
| Q |
111 |
caattt--cgctgaatgaatgtgctttctcacgcaatgctacagctttaagagctgcatctttccatcgcttcaactgtgtttccatcatccccatttct |
208 |
Q |
| |
|
|||||| | || | |||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||| |
|
|
| T |
29410976 |
caatttttctcttagtgaatgcgctttctcacgtaatgatacagcttcaagagctgcatctttccatcgcttcacctgcgcgtccatcatccccatttct |
29411075 |
T |
|
| Q |
209 |
ttagataaagctgaagatatcacacgaaactcagctttgatatcatttctccctgaaacgtttaatattgtaagaaatgaggagatccaaacatacacac |
308 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||| || ||||||||||||| ||||| | ||||||||| |||| |||||||||||||||| |
|
|
| T |
29411076 |
ttagataaagctgaagccatcacacgaaactcggctttgatgtcttttctccctgaaaaatttaacagtgtaagaaacgaggggatccaaacatacacag |
29411175 |
T |
|
| Q |
309 |
tgcaaat |
315 |
Q |
| |
|
||||||| |
|
|
| T |
29411176 |
tgcaaat |
29411182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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