View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_10 (Length: 526)
Name: NF1596_high_10
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 16 - 520
Target Start/End: Original strand, 28479 - 28984
Alignment:
| Q |
16 |
gttctttctgtagtatgcctttcaattcacatctttcgtattaggtctcgtcccggcatagctcagttagttggtaagggg-gtgaaattcttataacta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28479 |
gttctttctgtagtatgcctttcaattcacatctttcgtattaggtctcgtcccggcatagctcagttagttggtaaggggggtgaaattcttataacta |
28578 |
T |
|
| Q |
115 |
aacctccttactcgaattgctgtttccagacataattataattacaaacttatttatataaatatgaaatttattagattgataggaaggatgaaagcag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28579 |
aacctccttactcgaattgctgtttccagacataattataattacaaacttatttatataaatatgaaatttattagattgataggaaggatgaaagcag |
28678 |
T |
|
| Q |
215 |
gagctggtaaagggagaaaagcatgcctcatagtcacaactgttttcattgcaattgtattactaatagtctttctggcgttcacagtcttcaaatccaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28679 |
gagctggtaaagggagaaaagcatgcctcatagtcacaactgttttcattgcaattgtattactaatagtcattctggcgttcacagtcttcaaatccaa |
28778 |
T |
|
| Q |
315 |
gcatcccgttaccactgtgaattctttgaagctacgagactttgatgtcaacttggatattgcaaaactaagggtagatttgaacgtaaccctggatgtc |
414 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28779 |
gcatcccgttaccactgtgaattcattgaagctacgagactttgatgttaacttggatattgcaaaactaagggtagatttgaacgtaaccctggatgtc |
28878 |
T |
|
| Q |
415 |
gatgtttcagtcaagaatccaaataaggtgggcttcaagtactcaaacaccactgcacacctcaattacagaggccggctcataggtgaagtccctatct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28879 |
gatgtttcagtcaagaatccaaataaggtgggcttcaagtactcaaacaccactgcacacctcaattacagaggccagctcataggtgaagtccctatct |
28978 |
T |
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| Q |
515 |
ctgctg |
520 |
Q |
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| T |
28979 |
ctgctg |
28984 |
T |
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