View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_105 (Length: 240)
Name: NF1596_high_105
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_105 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 4490898 - 4491092
Alignment:
| Q |
1 |
tcttagtagtaaaatgtgagacttccattagataaaaataaaaatgtaaacctcaaaatagattggatggctgataaagacaaattgagatagatattgt |
100 |
Q |
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| T |
4490898 |
tcttagtagtaaaatgtgagacttccattagataaaaataaaaatgtaaacctcaaaatagattggat-----------------tgagatagatattgt |
4490980 |
T |
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| Q |
101 |
ccaaggaaattgttg-aaatgtcaatttaccatagtaatcactgaattttgcaagtgcatcatttgcaacttaagctgctgttataagaaccttttttat |
199 |
Q |
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| T |
4490981 |
ccaaggaaattgttggaaatgtcaatttaccatagtaatcactaaattttgcaagggcatcatttgcaacttaagctgctgttataagaaccttttttat |
4491080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 4496498 - 4496667
Alignment:
| Q |
16 |
gtgagacttccattagataaaaataaaaatgtaaacctcaaaatagattggatggctgataa---agacaaattgagatagatat---------tgtcca |
103 |
Q |
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| T |
4496498 |
gtgaaacttccattagataaaaataaaaaagtaaatctcaaattagattatatggctaagaaggaagaaaaattaagacagatatctaatcccttgtcca |
4496597 |
T |
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| Q |
104 |
aggaaattgttgaaatgtcaatttaccatagtaatcactgaattttgcaagtgcatcatttgcaacttaa |
173 |
Q |
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| T |
4496598 |
agaatgttgttgaaatgtcaatttaccatagtaatggttgaattttgcaagtgcatcctttgcaacttaa |
4496667 |
T |
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