View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_108 (Length: 239)
Name: NF1596_high_108
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_108 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 35980757 - 35980549
Alignment:
| Q |
13 |
tttttgtctctcccggaattgaattcaatcatgcacaacatctaaataagtcatttgaagttttacttgaaatgaaatagcagcaacatatattaacata |
112 |
Q |
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| T |
35980757 |
tttttgtctctcccagaattgaattcaatcatgcacaacatctaaataagtcatttgaagttttacttgaaatgaaatagcagcaacatatattaacata |
35980658 |
T |
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| Q |
113 |
tgttttctaatactaagaagcaaagtgatatatgaggattcttaattacatagcaaagtcaatcattgtcaagtgtacaatgatcccacatatcaggaaa |
212 |
Q |
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| T |
35980657 |
tgttttctaatactaagaagcaaagtgatatatgaggattcttaattacatagcaaagtcaatcattgtcaagtgtacaatgatcccacatatcaggaaa |
35980558 |
T |
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| Q |
213 |
ctactatca |
221 |
Q |
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| T |
35980557 |
ctactatca |
35980549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 35975143 - 35975084
Alignment:
| Q |
3 |
gccagaaccatttttgtctctcccggaattgaattcaatcatgcacaacatctaaataag |
62 |
Q |
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| T |
35975143 |
gccagaaccatttttttctctcccgaaattgaattcaaacacgcacaacatctaaataag |
35975084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 35970274 - 35970224
Alignment:
| Q |
153 |
cttaattacatagcaaagtcaa-tcattgtcaagtgtacaatgatcccaca |
202 |
Q |
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| T |
35970274 |
cttaattacacatcaaagtcacgtcattgtcaagtgtacaatgatcccaca |
35970224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 35970354 - 35970293
Alignment:
| Q |
87 |
aaatagcagcaacatatattaa-catatgttttctaatactaagaagcaaagtgatatatga |
147 |
Q |
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| T |
35970354 |
aaatagcagcaacatagatttagcatatgttttctaatatttaaaagcaaagtgatacatga |
35970293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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