View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_high_116 (Length: 235)

Name: NF1596_high_116
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_high_116
NF1596_high_116
[»] chr1 (10 HSPs)
chr1 (1-218)||(48652998-48653215)
chr1 (3-209)||(48618242-48618448)
chr1 (2-218)||(11547109-11547325)
chr1 (1-218)||(48585202-48585422)
chr1 (1-210)||(48639783-48639995)
chr1 (3-218)||(48656446-48656661)
chr1 (130-210)||(48661435-48661515)
chr1 (137-215)||(48628747-48628825)
chr1 (3-65)||(48628897-48628959)
chr1 (130-210)||(48667030-48667110)
[»] chr3 (1 HSPs)
chr3 (2-212)||(19665597-19665807)
[»] chr8 (2 HSPs)
chr8 (1-197)||(27223875-27224071)
chr8 (3-200)||(27228063-27228260)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 48653215 - 48652998
Alignment:
Q  1 gaagaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttggga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653215 gaagaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttggga 48653116  T
Q  101 acctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaa 200  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653115 cactcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaa 48653016  T
Q  201 caaatcaatcctcataag 218  Q
    ||||||||||||||||||    
T  48653015 caaatcaatcctcataag 48652998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 48618242 - 48618448
Alignment:
Q  3 agaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggaac 102  Q
    |||||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||||| ||||||||||||  ||||| ||   | ||||      
T  48618242 agaaccttatattgatgttcaattaccttttcaagttcttaaatacaatgaaatcccagattttcttcatccttttagtcaatttccatttctagggaca 48618341  T
Q  103 ctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaca 202  Q
    ||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48618342 ctcatcttagaacagtttaagaatttgtctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaaa 48618441  T
Q  203 aatcaat 209  Q
    || ||||    
T  48618442 aaacaat 48618448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 11547325 - 11547109
Alignment:
Q  2 aagaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggaa 101  Q
    ||||||||||||||||||||||||||||||||  ||| |||||| | |||||||||||||||||||| |||||||||||| ||| || ||   | ||||     
T  11547325 aagaaccttatattgatgttcaattaccttttcaagtccttaaatacaatgaaatcccagattttcttcatccttttagtccatatccatttctagggac 11547226  T
Q  102 cctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaac 201  Q
     ||| ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||     
T  11547225 actcatcttagaacagtttaagaatttatctaaagtgttttgtgttttagtagaaacctatgaagaactagaacatgatttcattgactatattacaaaa 11547126  T
Q  202 aaatcaatcctcataag 218  Q
    ||||| |||| ||||||    
T  11547125 aaatccatccacataag 11547109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 48585422 - 48585202
Alignment:
Q  1 gaagaaccttatattgatgttcaatta---ccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttg 97  Q
    |||||||||||||||||||||||| |    |||| |  |||||||||| | ||||||||| ||||| || ||||||||||| || |||||| ||   | |    
T  48585422 gaagaaccttatattgatgttcaactcatcccttctagagttcttaaatacaatgaaatctcagatcttgtgcatcctttttgttcatttccattcctag 48585323  T
Q  98 ggaacctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 197  Q
    | || || ||||||||| |  ||||| | ||||||||||| |||||||| ||||| || ||||||||||||||||||||||| ||||| || ||||||||    
T  48585322 gtaaacttgtcttagaagagtttaaggacttatctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgaattcatagattatatttc 48585223  T
Q  198 aaacaaatcaatcctcataag 218  Q
     || |||||||||| ||||||    
T  48585222 gaaaaaatcaatccccataag 48585202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 48639995 - 48639783
Alignment:
Q  1 gaagaaccttatattgatgttcaattac---cttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttg 97  Q
    |||||||||||||||||||||||| |     ||| | ||||||||||| | ||||||||| |||| ||| | |||||||||    |||||| ||   | |    
T  48639995 gaagaaccttatattgatgttcaactcaattcttctatagttcttaaatacaatgaaatctcagactttatacatccttttttcccatttccatttctag 48639896  T
Q  98 ggaacctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 197  Q
    | || ||| |||||||| |  ||||| | || |||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||||    
T  48639895 gtaaactcatcttagaagagtttaaggacttgtctaaagtgttttgtgtattagtggatacctatgaagaactagagcatgatttcatagattatatttc 48639796  T
Q  198 aaacaaatcaatc 210  Q
    ||| |||||||||    
T  48639795 aaaaaaatcaatc 48639783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 48656661 - 48656446
Alignment:
Q  3 agaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggaac 102  Q
    |||||||| ||||||||||||||| |||| |||||| |||||||| | |||||| || | | |||||||||||| || ||||| ||  |   | ||        
T  48656661 agaaccttgtattgatgttcaattgccttctgtagtccttaaacacagtgaaattcctgttcttctgcatccttctaatacatatccctttctaggccca 48656562  T
Q  103 ctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaaca 202  Q
    ||| | |||| ||||||||||||||| ||||||| ||| ||||| || || || ||||||||||||||||||| |||||| || || ||||||||  | |    
T  48656561 ctcattttaggacaaattaagaatttgtctaaagcattgtgtgtatttgtggatacctatgaagaactagagcctgattttatcgattatatttcggaaa 48656462  T
Q  203 aatcaatcctcataag 218  Q
    | |||||| |||||||    
T  48656461 agtcaatcatcataag 48656446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 48661515 - 48661435
Alignment:
Q  130 tctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaaatcaatc 210  Q
    |||||||| |||||||| ||||| || |||| ||||||| |||||||||||||||| || ||||||||||| |||||||||    
T  48661515 tctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcaaaaaaatcaatc 48661435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 48628825 - 48628747
Alignment:
Q  137 tattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaaatcaatcctcat 215  Q
    |||||||||| ||||  || ||||||||||||||||||||||||||||| || ||| |||| || |||||| |||||||    
T  48628825 tattttgtgtattagcggatacctatgaagaactagagcatgatttcatcgattatctttccaaaaaatcagtcctcat 48628747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 48628959 - 48628897
Alignment:
Q  3 agaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattt 65  Q
    ||||||||||||||||||||| || |||||| |||| |||||| | |||||||||||||||||    
T  48628959 agaaccttatattgatgttcatttgccttttatagtccttaaatacaatgaaatcccagattt 48628897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 48667110 - 48667030
Alignment:
Q  130 tctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaacaaatcaatc 210  Q
    |||||||| |||||||| ||||| || |||| ||||||| |||||||||||||||| || ||||||||  | |||||||||    
T  48667110 tctaaagtgttttgtgtattagtggatacctttgaagaattagagcatgatttcatcgattatatttcggaaaaatcaatc 48667030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 19665597 - 19665807
Alignment:
Q  2 aagaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggaa 101  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||||| ||||| || |||||||| ||||||||||||| || |  ||   | ||||     
T  19665597 aagaaccttatattgatgctcaattacctttcgtagctcttaaacataacgaaataccggattttctacatccttttagtaaatattcatttctagggac 19665696  T
Q  102 cctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaac 201  Q
     ||| | ||||||||  ||||||||||||||||||| |||||||| || || || |  ||||| |||||||||||||||| ||| ||||||||||| ||     
T  19665697 actcattttagaacagtttaagaatttatctaaagtgttttgtgtattggtggatagttatgatgaactagagcatgattacatcgactatatttcgaaa 19665796  T
Q  202 aaatcaatcct 212  Q
    |||||||||||    
T  19665797 aaatcaatcct 19665807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 27224071 - 27223875
Alignment:
Q  1 gaagaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttggga 100  Q
    |||||||| |||||||||||||||||  ||| ||||||||||||  | ||||| ||||| |||||| | ||   |||||||||||||  |    ||||||    
T  27224071 gaagaaccatatattgatgttcaattgtcttctgtagttcttaagtacaatgagatcccggattttgttcaaggttttagtacattttcaattcttggga 27223972  T
Q  101 acctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttc 197  Q
       || |  | |||||||||||||| || |||||||| |||||||| || || || || ||||| |||||||| ||||||||||| |||||| ||||    
T  27223971 caatcataatggaacaaattaagaacttgtctaaagtgttttgtgtattggttgatacgtatgaggaactagaacatgatttcatcgactatgtttc 27223875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 200
Target Start/End: Complemental strand, 27228260 - 27228063
Alignment:
Q  3 agaaccttatattgatgttcaattaccttttgtagttcttaaacataatgaaatcccagattttctgcatccttttagtacatttctatcatttgggaac 102  Q
    ||||||||||||||||||||||||  ||| | |||| |||||| | |||||||| |||||||| || |||  ||||||||  | || ||   |||||       
T  27228260 agaaccttatattgatgttcaattgtcttctctagtccttaaatacaatgaaataccagatttccttcattgttttagtaagtatccatttcttgggtca 27228161  T
Q  103 ctcgtcttagaacaaattaagaatttatctaaagtattttgtgttttagtagaaacctatgaagaactagagcatgatttcattgactatatttcaaa 200  Q
    ||| | || ||||| |||||||| || |||||||| |||||||| || || || |||||||| ||| | || |||||||||||  | |||||||||||    
T  27228160 ctcttattggaacagattaagaacttgtctaaagtgttttgtgtattggtggatacctatgaggaattggaacatgatttcataaattatatttcaaa 27228063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University