View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_2 (Length: 874)
Name: NF1596_high_2
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 799; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 16 - 858
Target Start/End: Original strand, 5624927 - 5625769
Alignment:
| Q |
16 |
atgcaagttcttttgtcaagagataagctcaaataagttcatctaaacagacccttaaactaaggtcgcaatctttaatattgcgaaaacatgatcgcaa |
115 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5624927 |
atgcaagttcttttgtcaggagataagctcaaataagttcattcaaacagacccttaaactaaggtcgcaatctttaatatcgcgaaaacatgatcgcaa |
5625026 |
T |
|
| Q |
116 |
ttaaaaaccatgattgttcttgcaacaacaaaattattcgagagtttttgcaattaaatcacaaccaaaaactatgataatttcactattttcaaaacat |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5625027 |
ttaaaaaccatgattgttcttgcaacaacaaaattattcgagagtttttgcaattaaatcacaaccaaaaactatgataatttcactattttcaaaacat |
5625126 |
T |
|
| Q |
216 |
caaagtttacccaataagctgcagtgaatccaccaattccagaagaaagatgaataacatagccaccagagaaatcaatgacaccccaatgatacaaaaa |
315 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5625127 |
caaagtttacccaataagctgcagtgaatccaccaattccagaagaaagatgaataacatagccaccagagaaatcaatgacaccccaatgatacaaaaa |
5625226 |
T |
|
| Q |
316 |
tccaccaccccatatactaaaagcaccaacagtgtaagagaaaatgagccaaagaggtacaaaagccatccaagccctaatgttcattcttccaagaaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5625227 |
tccaccaccccatatactaaaagcaccaacagtgtaagagaaaatgagccaaagaggtacaaaagccatccaagccctaatgttcattcttccaagaaca |
5625326 |
T |
|
| Q |
416 |
gatccagctaacaaaataacagtaatagcagcaaaattgaattggaaataaacaagtgaagccataggaaaaaatggttgtgttgttgaagcttcttcag |
515 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5625327 |
gatccagctaacaaaataacagtaatagcagcaaaattgaattgaaaataaacaagtgaagccataggaaaaagtggttgtgttgttgaagcttcttcag |
5625426 |
T |
|
| Q |
516 |
taccattcttaaagaaatgagtgctttcaggtacttttgcttgatgtgtaagaaatttttgacctaatgaaggtgcacctttaccccaaaatggaaaaag |
615 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5625427 |
taccattcttaaagaaatgagtactttcaggtacttttgcttgatgtgtaagaaatttttgacctaatgaaggtgcacctttaccccaaaatggaaaaag |
5625526 |
T |
|
| Q |
616 |
ttcatcaccaaaagccatacggtaacataaaagtacccaacatattaatactgatgcataagcataaagtgccatgaaagctgaattcatagcccatttc |
715 |
Q |
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| T |
5625527 |
ttcatcaccaaaagccatacggtaacataaaagaacccaacatattagcactgatgcataagcataaagtgccatgaaagctgaattcatagcccatttc |
5625626 |
T |
|
| Q |
716 |
tttttgaccatacttgcatagagaattacaagacctggcatgctttgtaggccaactagggttgatgctgtcatttgccatgagttgtctcctttgttta |
815 |
Q |
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| T |
5625627 |
tttttgaccatacttgcatagagaattacaagacctggcatgctttgtagaccaactagggttgatgctgtcatttgccatgagttgtctcctttgttta |
5625726 |
T |
|
| Q |
816 |
gccattgtggtgatgaaggaaggtgctcttgatatgctgttgg |
858 |
Q |
| |
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| T |
5625727 |
gccattgtggtgatgaaggaaggtgctcttgatatgctgttgg |
5625769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 222 - 830
Target Start/End: Original strand, 25670922 - 25671533
Alignment:
| Q |
222 |
ttacccaataagctgcagtgaatccaccaattccagaagaaagatgaataacatagccaccagagaaatcaatgacaccccaatgatacaaaaatccacc |
321 |
Q |
| |
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||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| | ||||||||| |
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| T |
25670922 |
ttacccaataagcagcagtgaaaccagcaattccagaagaaagatgaataacataaccaccagaataatcaatcacaccccaatgataaagaaatccacc |
25671021 |
T |
|
| Q |
322 |
accccatatactaaaagcaccaacagtgtaagagaaaatgagccaaagaggtacaaaagccatccaagccctaatgttcattcttccaagaacagatcca |
421 |
Q |
| |
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|||||| | |||||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||| |
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| T |
25671022 |
accccaaagactaaaagcaccaacagtataagaaaaaataagccaaagaggaacaaaagccatccaagctttaatattcattcttccaagaacagaacca |
25671121 |
T |
|
| Q |
422 |
gctaacaaaataacagtaatagcagcaaaattgaattggaaataaacaagtgaagccataggaaaaaatggttgtgttgttgaagcttc---ttcagtac |
518 |
Q |
| |
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|| |||||||| | |||||||||||||||| | || || ||||||||||||||||||||||||||||| |||| | | | | ||| ||| || |
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| T |
25671122 |
gccaacaaaatcatagtaatagcagcaaaagtaaactgaaaataaacaagtgaagccataggaaaaaaaggttcttccataggtgtttcaatatcaacac |
25671221 |
T |
|
| Q |
519 |
cattcttaaagaaatgagtgctttcaggtacttttgcttgatgtgtaagaaatttttgacctaatgaaggtgcacctttaccccaaaatggaaaaagttc |
618 |
Q |
| |
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||||||| | | ||||| ||| |||||||||||||| | |||||||||||| ||||| | ||||||||||||||||| || || |||||||| |
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| T |
25671222 |
cattcttgtaatagtgagtacttgcaggtacttttgctctagcaacaagaaatttttgtcctaaagccggtgcacctttaccccagaaaggtaaaagttc |
25671321 |
T |
|
| Q |
619 |
atcaccaaaagccatacggtaacataaaagtacccaacatattaatactgatgcataagcataaagtgccatgaaagctgaattcatagcccatttcttt |
718 |
Q |
| |
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||||||||||||||| | ||| | ||| |||||||| |||||||||| |||| ||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
25671322 |
atcaccaaaagccattctataagcaacaagaacccaacagattaatactgctgcaaaagcatatagtgccatgaaagctgaattcactgcccatttcttt |
25671421 |
T |
|
| Q |
719 |
ttgaccatacttgcatagagaattacaagacctggcatgctttgtaggccaactagggttgatgctgtcatttgccatgagttgtctcctttgtttagcc |
818 |
Q |
| |
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|| || || ||||||||||||||||| || |||||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||| || |
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| T |
25671422 |
ttcactatgcttgcatagagaattactagtcctggcatgctttgtaaaccaactagtgttgctgctgtcatttgccatgcgttgtctcctttgtttaacc |
25671521 |
T |
|
| Q |
819 |
attgtggtgatg |
830 |
Q |
| |
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||| |||||||| |
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| T |
25671522 |
attctggtgatg |
25671533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 224 - 391
Target Start/End: Original strand, 39726388 - 39726555
Alignment:
| Q |
224 |
acccaataagctgcagtgaatccaccaattccagaagaaagatgaataacatagccaccagagaaatcaatgacaccccaatgatacaaaaatccaccac |
323 |
Q |
| |
|
||||||||||| || ||||| ||| |||| ||||||||||||||||||||||| |||||||| |||| || |||||||| ||| |||| || ||||||| |
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|
| T |
39726388 |
acccaataagcagcggtgaaaccagcaatcccagaagaaagatgaataacataaccaccagaataatccataacaccccattgaaacaagaaaccaccac |
39726487 |
T |
|
| Q |
324 |
cccatatactaaaagcaccaacagtgtaagagaaaatgagccaaagaggtacaaaagccatccaagcc |
391 |
Q |
| |
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|||| | |||||||||||||| ||| ||||| ||| | | |||||| || ||||| |||||||||| |
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| T |
39726488 |
cccacaaactaaaagcaccaatagtataagaaaaagttaaccaaagtggcacaaacatcatccaagcc |
39726555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 686 - 815
Target Start/End: Original strand, 39726850 - 39726979
Alignment:
| Q |
686 |
gccatgaaagctgaattcatagcccatttctttttgaccatacttgcatagagaattacaagacctggcatgctttgtaggccaactagggttgatgctg |
785 |
Q |
| |
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||||||||||| || || | ||||||||||||||| || || || ||||||| || || || |||||||||||||| | ||||| ||||| | || | |
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| T |
39726850 |
gccatgaaagcagagtttacagcccatttctttttcactatgctgccatagaggataactagtcctggcatgctttgaattccaacaagggtagctgata |
39726949 |
T |
|
| Q |
786 |
tcatttgccatgagttgtctcctttgttta |
815 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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|
| T |
39726950 |
tcatttgccatgagttgtctcctttgttta |
39726979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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