View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_26 (Length: 435)
Name: NF1596_high_26
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 35569261 - 35569653
Alignment:
| Q |
19 |
aaataagaagaaaaaagtg---aaccatgagaagaatgagaaaagtgattcttgttccagcttctttttgtcaagttattgcgggatactggatagagct |
115 |
Q |
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| T |
35569261 |
aaataagaagaaaaaagtgtataaccatgagaagaatgagaaaagtgattcttgttccagcttctttttgtcaagttattgcgggatactggatagagct |
35569360 |
T |
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| Q |
116 |
ttaacgacatgtcaagctggaaagacttgttttaatttaatttcatctctcatgacaacctatatagtacctaacatgttttgtaccctaaaaaataaaa |
215 |
Q |
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| T |
35569361 |
ttaacgacatgtcaagctggaaagacttgttttaatttaatttcatctctcatgacaacctatatagtacctaacatgttttgtaccctaaaaaataaaa |
35569460 |
T |
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| Q |
216 |
tagattttgtaccaaaaaatagaatatacctaacatgagattgggcttctaactaattattaatgtatttccgttatnnnnnnnnnccaattattaatgt |
315 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
35569461 |
taga--ttgtaccaaaaaatagaatatacctaacatgagattgggcttctaactaattattaatgtatttccgtta---aaaaaaactaattattaatgt |
35569555 |
T |
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| Q |
316 |
attattatttctttaatatcatactcctaaggtatatgaccccatgctttaagtcacttggactgccttgcaagctgctatatatcttgctggagggaga |
415 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35569556 |
attattatttctttaatatca------taaggtatatgaccccatgctttaagtcacttggactgccttgcaagctgctatatatcttgctggagggaga |
35569649 |
T |
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