View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_45 (Length: 360)
Name: NF1596_high_45
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 48310684 - 48310341
Alignment:
| Q |
1 |
tttagttagaattgacacagaagctttgattttgttgcttctgcaaaccacagtcaaaaggctagttggacgtgagtttatgaaatcgaaagcagaacca |
100 |
Q |
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| T |
48310684 |
tttagttagaattgacacataagctttgattttgttgcttctacaaaccacagtcaaaaggctagttggacgtgagcttacgaaatcgaaagcagaacca |
48310585 |
T |
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| Q |
101 |
aactgaaaattaaaatatcaaacataacatatagatccgttagagctaggcagttaaaattaaaattttagttagaattagaaaagggcgtcagcgtcaa |
200 |
Q |
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| T |
48310584 |
aactgacaattaaaatatcaaacataacatatagatccgttagagctaggtagttaaaattaaaattttagttagaattagaaaagggcgtcagcgtcaa |
48310485 |
T |
|
| Q |
201 |
gatcgtaaatgtaagatattgtaaaatacgtaaaatagcataagtaaggaaaaccatttaaattggaataacttaaataaacataaatttgaaatcaacg |
300 |
Q |
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| T |
48310484 |
gatcgtaaatgtaagatattgtaaaacacgtaaaatagcataagtaaggaaaaccatttaaattggaataacttaaataaacataaatttgaaatcaacg |
48310385 |
T |
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| Q |
301 |
agaaaatcatacacaaggagaaaaactcggccgaaggaagcttc |
344 |
Q |
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|||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
48310384 |
agaaaatcatacacaaggagaaaaacacggccgagggaagcttc |
48310341 |
T |
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