View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_high_48 (Length: 345)
Name: NF1596_high_48
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_48 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 35487894 - 35488220
Alignment:
| Q |
1 |
gagagaaaaacggttatggagagagaaagaaatgaaatgaagcggttttcgtgttctcattttgcattaaatagagcgcgaaaaatgacaaagtgagatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35487894 |
gagagaaaaacggttatggagagagaaagaaatgaaatgaagcggttttcgtgttctcattttgcattaaatagagcgcgaaagatgacaaagtgagatt |
35487993 |
T |
|
| Q |
101 |
gaaattgaagtgaaatgcaaatacagttgaaagtaaagaatagaaagtgtcatattggattcatattatattttaaagatggtgtttttaaattaagaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35487994 |
gaaattgaagtgaaatgcaaatacagttgaaagtaaagaatagaaagtgtcatattggattcatattatattttaaagatggtgtttttaaattaagaaa |
35488093 |
T |
|
| Q |
201 |
atcaaaatatattattaaatttagaccattgatattggatccaacgatcaatccatgtgattacttcttatccaaatcatgaattgtgttgcttcactct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35488094 |
atcaaaatatattattaaatttagaccattgatattggatccaacgatcaatccatgtgattacttcttatccaaatcatgaattgtgttgcttcactct |
35488193 |
T |
|
| Q |
301 |
tttgttgcaggtgtatatgacatttgt |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35488194 |
tttgttgcaggtgtatatgacatttgt |
35488220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 6980936 - 6980891
Alignment:
| Q |
3 |
gagaaaaacggttatggagagagaaagaaatgaaatgaagcggttt |
48 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
6980936 |
gagagaaacggttacggagagagaaagaaacgaaatgaaacggttt |
6980891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University