View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_49 (Length: 343)
Name: NF1596_high_49
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 40265829 - 40266160
Alignment:
| Q |
1 |
cctttacaccttggagatgattcaatgttttacatgcacgtgcccaacccgaatcttcaaacgtctcgcttccaaccacaagcacgcgaccggtcccatc |
100 |
Q |
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| T |
40265829 |
cctttacaccttggagatgattcaatgttttacatgcacgtgcccaacccgaatcttcaaacgtctcgcttccaaccacaagcacgcgaccggtcccatc |
40265928 |
T |
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| Q |
101 |
atcctaaca----gaattgaaggacttgttatctaaaatattaatttcaagtatattctgtcaaaatgtttagtttataagcttaaatattcacttcaag |
196 |
Q |
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| T |
40265929 |
atcctaacaaacagaatataaggacttgttatctaaaatattaatttcaagtatattctgttaaaatgtttagtttataagcttaaatattcacttcaag |
40266028 |
T |
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| Q |
197 |
aaacaggcatctcaattcccatcatcccgataaccaggaacaactaaaattgcattaaaagaacagagaaaaagtacacaccagataccaaggaacctct |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40266029 |
aaacaggcatctcaattcccatcatcccgataaccaggaacaactaaaattgcattaaaagaacagagaaaaagtacacaccagataccaaggaacctca |
40266128 |
T |
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| Q |
297 |
ttgcgagtgtacaatgtcaacggagaattttg |
328 |
Q |
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| T |
40266129 |
ttgcgagtgtacaatgtcaacggagaattttg |
40266160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 40284660 - 40284696
Alignment:
| Q |
71 |
tccaaccacaagcacgcgaccggtcccatcatcctaa |
107 |
Q |
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| T |
40284660 |
tccaaccacaagcacacgaccagtcccatcatcctaa |
40284696 |
T |
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