View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1596_high_5 (Length: 655)

Name: NF1596_high_5
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1596_high_5
NF1596_high_5
[»] chr1 (1 HSPs)
chr1 (19-646)||(38224301-38224927)


Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 19 - 646
Target Start/End: Original strand, 38224301 - 38224927
Alignment:
Q  19 gaaagagctttgaatctgcataaaaatttcagtaaacaaaatttaaattttctctgttctttctccaaggcaagttttgagatcttaagttcaagagcac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  38224301 gaaagagctttgaatctgcataaaaatttcagtaaacaaaatttaaattttctttgttctttctctaaggcaagttttgagatcttaagttcaagagcac 38224400  T
Q  119 attcagtagcttaatatttgaagtttgatgaacataaccgaaaagtctgaaatagaaaagctactaaaagtaaaacacacctaacaaagtagtttcaatg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38224401 attcagtagcttaatatttgaagtttgatgaacataaccgaaaagtctgaaatagaaaagctactaaaagtaaaacacacctaacaaagtagtttcaaag 38224500  T
Q  219 aaaagactgccaaaacttaagccatcaacacaccaaatttgaccataagaaagacatacttgttgatcacagaattaaatgctaggaaatttgatcatca 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38224501 aaaagactgccaaaacctaagccatcaacacaccaaatttgaccataagaaagacatacttgttgatcacagaattaaatgctaggaaatttgatcatca 38224600  T
Q  319 atcatttcatgggtttgtgataaaataattcaatgcatgtaacgttgtccatcattatggaccatataataaaataa-tacatcaatcatcaatacttta 417  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||    
T  38224601 atcatttcatgggtttgtgataaaataattcaatgcatataacgttgtccatcattatggacc--ataataaaataattacatcaatcatcaatacttta 38224698  T
Q  418 tatgcacgttaataatatcaagactaaaggaaacaatacctggaccttagaatatggtaaattgttacacctctgaagtatgaatttgttctggctagca 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  38224699 tatgcacgttaataatatcaagactaaaggaaacaatacctggaccttagactatggtaaattgttccacctctgaagtatgaatttgttctggctagca 38224798  T
Q  518 aaattctatttatagttatatacgtgtgtataaatttgagggaggacccaccactaaaccgaaagtgggatctgacacaatttctgaggtgttcagcatc 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38224799 aaattctatttatagttatatacgtgtgtataaatttgagggaggacccaccactaaaccgaaagtgggatctgacacaatttctgaggtgttcagcatc 38224898  T
Q  618 cattatttttcaattgctattagtataat 646  Q
    ||||||||||||||||| |||||||||||    
T  38224899 cattatttttcaattgcgattagtataat 38224927  T

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