View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_58 (Length: 315)
Name: NF1596_high_58
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_58 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 71 - 310
Target Start/End: Original strand, 39983763 - 39984002
Alignment:
| Q |
71 |
tacttcacatttatctgatttctataccttcattcattgtttatgcattcacaggcatccattttccataacttctgcccctaatgatgattaccttagt |
170 |
Q |
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| T |
39983763 |
tacttcacatttatctgatttctataccttcattcattgtttatgcattcacaggcatccattttccataacttctgcccctaatgatgattaccttagt |
39983862 |
T |
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| Q |
171 |
gttcatattaaaatacttggtgattggactagaagtctgaaaaccaaattctcacaggtgaatattattatttttattatccctgaccggaattgattat |
270 |
Q |
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| T |
39983863 |
gttcatattaaaatacttggtgattggactagaagtctgaaaaccaaattctcacaggtgaatattattattaatattatcgctgaccggaattgattat |
39983962 |
T |
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| Q |
271 |
gtgttttcttataattaacaagtttattgcctttgcttct |
310 |
Q |
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| T |
39983963 |
gtgttttcttataattaacaagtttattgcttttgtttct |
39984002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 39983729 - 39983762
Alignment:
| Q |
19 |
gcatctaattagagaatcatataagcttgagcta |
52 |
Q |
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| T |
39983729 |
gcatctaattagagcatcatataagcttgagcta |
39983762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 44900003 - 44900048
Alignment:
| Q |
106 |
attgtttatgcattcacaggcatccattttccataacttctgcccc |
151 |
Q |
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| T |
44900003 |
attgtttatgctttcacaggcatccattttctataacctccgcccc |
44900048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 44916249 - 44916361
Alignment:
| Q |
118 |
ttcacaggcatccattttccataacttctgcccctaatgatgattaccttagtgttcatattaaaatacttggtgattggactagaagtctgaaaaccaa |
217 |
Q |
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||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||| || | || | | ||||| ||||| |||||||| | | ||| |
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| T |
44916249 |
ttcacaggcatccgttttccataacctcttccccaggagatgactaccttagtgttcacatcagaacattaggtgactggaccagaagtctcagagtcaa |
44916348 |
T |
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| Q |
218 |
attctcacaggtg |
230 |
Q |
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||||||| ||||| |
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| T |
44916349 |
attctcagaggtg |
44916361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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