View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_61 (Length: 310)
Name: NF1596_high_61
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 46711935 - 46711637
Alignment:
| Q |
1 |
actttctaagtgaaacaccagctccacttctaaagtatagagaagaagaacttgaaaccttaagaggctctggagataacatccaactgaaagaatggga |
100 |
Q |
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| T |
46711935 |
actttctaagtgaaacaccagctccacttcttaagtatagagaagaagaacttgaaaccttaagaggctctggagatagcatccaactgaaagaatggga |
46711836 |
T |
|
| Q |
101 |
cagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatccttac |
200 |
Q |
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| T |
46711835 |
cagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatccttac |
46711736 |
T |
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| Q |
201 |
cctcgcaggggaagaactaatagaccacccgcaaagtcaggttcggcttttccacaatgatcaccagtttaataattatttactcgcaattaatatatt |
299 |
Q |
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| T |
46711735 |
cctcgcaggggaagaactaatagaccacccgcaaagtcaggttcggcttttccacaatgatcaccagtttaataattatttactcgcaattaatatatt |
46711637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 36923552 - 36923674
Alignment:
| Q |
96 |
tgggacagggtttatgattatgcatactataatgatttggcggatcctgataaaggtccgaaatatgttcgtccagttcttggagggtccagtgaatatc |
195 |
Q |
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||||| ||||||||||||||||||| ||| |||||||||| ||||||||||||||| || || |||||| ||||||||||||| |||||||| |
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| T |
36923552 |
tgggatagggtttatgattatgcatgctacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatc |
36923651 |
T |
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| Q |
196 |
cttaccctcgcaggggaagaact |
218 |
Q |
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| T |
36923652 |
cttaccctcgcaggggaagaact |
36923674 |
T |
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