View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_high_66 (Length: 304)
Name: NF1596_high_66
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_66 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 35399159 - 35398856
Alignment:
| Q |
1 |
ctagatgctacaaacctacaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacataaacaagttcgaactgcatatc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35399159 |
ctagatgctacaaacctaaaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacataaacaagttcgaactgcatatc |
35399060 |
T |
|
| Q |
101 |
ttaagattctattcagaaatcagattggtagagtagagcaaaataatgttaataattgatttaatttgttttagagaaataattgagttaattaatctac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35399059 |
ttaagattctattcagaaatcagattggtagagtagggcaaaataatgttaataattgatttaatttgttttagagaaataattgagttaattaatctac |
35398960 |
T |
|
| Q |
201 |
atgatcaatgttcttgcaaaccttgattaggtcaaaagtcaaaagacaactaaaagttacttttatagcattagcaaagagccatagaagtagaactagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35398959 |
atgatcaatgttcttgcaaaccttgattaggtcaaaagtcaaaagacaactaaaagttacttttatagcattagcaaagagccatagaagtagaactagt |
35398860 |
T |
|
| Q |
301 |
tatt |
304 |
Q |
| |
|
|||| |
|
|
| T |
35398859 |
tatt |
35398856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 11321327 - 11321405
Alignment:
| Q |
1 |
ctagatgctacaaacctacaacacattacgaacgtggcaattataaggcagagcaaaattgcaaaatcacttaaacata |
79 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||| |||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
11321327 |
ctagatgctacaagcctacatcacatcacgaacgcttcaattataaggcagagcaaaatcgtgaaatctcttaaacata |
11321405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 82
Target Start/End: Complemental strand, 9323734 - 9323690
Alignment:
| Q |
38 |
caattataaggcagagcaaaattgcaaaatcacttaaacataaac |
82 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
9323734 |
caattataaggcagagcaaaatcgcaatatcacttaaatataaac |
9323690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University