View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_high_69 (Length: 299)
Name: NF1596_high_69
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_69 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 7566104 - 7565842
Alignment:
| Q |
20 |
gtctatttgcgagcgcaccttcaccgagcccttttggatcttatatttcttcttgctttgtttcttaagtttttcttggaggtccgacatcgtacctacg |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7566104 |
gtctatctgcgagcgcaccttcaccgagcccttttggatcttatatttcttcttgctttgtttcttaagtttttcttggaggtccgacatcgtacctacg |
7566005 |
T |
|
| Q |
120 |
aacaggaaaataacagaaattagtaaggagattataaaaataatacataagtataggagcatatcaaagatacttaacaaacctcgcggatctgaaacaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7566004 |
aacaggaaaataacagaaattagtaaggagattataaaaataatacataagtataggagcatatcaaagatacttaacaaacctcgtggatctgaaacaa |
7565905 |
T |
|
| Q |
220 |
gatcatttgtgttaatataacgaggttcagtacaaggtcttctgtcataaacgtacaccatat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
7565904 |
gatcatttgtgttaatataacgaggttcagtacaagatcttctctcataaacgtacaacatat |
7565842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 7572511 - 7572249
Alignment:
| Q |
20 |
gtctatttgcgagcgcaccttcaccgagcccttttggatcttatatttcttcttgctttgtttcttaagtttttcttggaggtccgacatcgtacctacg |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7572511 |
gtctatctgcgagcgcaccttcaccgagcccttttggatcttatatttcttcttgctttgtttcttaagtttttcttggaggtccgacatcgtacctacg |
7572412 |
T |
|
| Q |
120 |
aacaggaaaataacagaaattagtaaggagattataaaaataatacataagtataggagcatatcaaagatacttaacaaacctcgcggatctgaaacaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7572411 |
aacaggaaaataacagaaattagtaaggagattataaaaataatacataagtataggagcatatcaaagatacttaacaaacctcgtggatctgaaacaa |
7572312 |
T |
|
| Q |
220 |
gatcatttgtgttaatataacgaggttcagtacaaggtcttctgtcataaacgtacaccatat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
7572311 |
gatcatttgtgttaatataacgaggttcagtacaagatcttctctcataaacgtacaacatat |
7572249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 7581305 - 7581043
Alignment:
| Q |
20 |
gtctatttgcgagcgcaccttcaccgagcccttttggatcttatatttcttcttgctttgtttcttaagtttttcttggaggtccgacatcgtacctacg |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7581305 |
gtctatctgcgagcgcaccttcaccgagcccttttggatcttatatttcttcttgctttgtttcttaagtttttcttggaggtccgacatcgtacctacg |
7581206 |
T |
|
| Q |
120 |
aacaggaaaataacagaaattagtaaggagattataaaaataatacataagtataggagcatatcaaagatacttaacaaacctcgcggatctgaaacaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7581205 |
aacaggaaaataacagaaattagtaaggagattataaaaataatacataagtataggagcatatcaaagatacttaacaaacctcgtggatctgaaacaa |
7581106 |
T |
|
| Q |
220 |
gatcatttgtgttaatataacgaggttcagtacaaggtcttctgtcataaacgtacaccatat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
7581105 |
gatcatttgtgttaatataacgaggttcagtacaagatcttctctcataaacgtacaacatat |
7581043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 276
Target Start/End: Complemental strand, 7584695 - 7584438
Alignment:
| Q |
20 |
gtctatttgcgagcgcaccttcaccgagcccttttggatcttatatttcttcttgctttgtttcttaagtttttcttggaggtccgacatcgtacctacg |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
7584695 |
gtctatctgcgagcgcaccttcaccgagccctttcggatcttatatttcttcttgctttgtttcttaagtttttcttggaggtccgatatcgtacctagg |
7584596 |
T |
|
| Q |
120 |
aacaggaaaataacagaaattagtaaggagattataaaaataatacataagtataggagcatatcaaaga-tacttaacaaacctcgcggatctgaaaca |
218 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
7584595 |
aacaggaaaataaaataaattagtaaggagattataaaaataatacataagtataggagcatatcaaagattacttaacagacctcgtggatctgaaaca |
7584496 |
T |
|
| Q |
219 |
agatcatttgtgttaatataacgaggttcagtacaaggtcttctgtcataaacgtaca |
276 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| ||||| ||| ||||||||| |
|
|
| T |
7584495 |
agatcctttgtgttaatataacgaggttcaatacaagatcttccctcagaaacgtaca |
7584438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University