View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_high_71 (Length: 288)
Name: NF1596_high_71
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_71 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 8739459 - 8739386
Alignment:
| Q |
1 |
taggtttgcaagctccgattaagtccaatatgataccttattagagtctgataagattaacaattaagtgcaat |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
8739459 |
taggtttgcaagctccgattaagtccaatatgataccttatcagagtctaataagattaacaattaagtgcaat |
8739386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 9091697 - 9091624
Alignment:
| Q |
1 |
taggtttgcaagctccgattaagtccaatatgataccttattagagtctgataagattaacaattaagtgcaat |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
9091697 |
taggtttgcaagctccgattaagtccaatatgataccttatcagagtctaataagattaacaattaagtgcaat |
9091624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 8738542 - 8738463
Alignment:
| Q |
100 |
acaatataaataaatatggttctttagcctcttttaggcttagtgttgaaatactctatcctactccccctttagtcatc |
179 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8738542 |
acaaaataaataaatatggttctttagcctttattaggcttagtgttgaattactctatcctactcccactttagtcatc |
8738463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 9090780 - 9090701
Alignment:
| Q |
100 |
acaatataaataaatatggttctttagcctcttttaggcttagtgttgaaatactctatcctactccccctttagtcatc |
179 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
9090780 |
acaaaataaataaatatggttctttagcctttattaggcttagtgttgaattactctatcctactcccactttagtcatc |
9090701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 10291171 - 10291105
Alignment:
| Q |
2 |
aggtttgcaagctccgattaagtccaatatgataccttattagagtctgataagattaacaattaag |
68 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
10291171 |
aggtttgtaagctctgattaagtccaatctgataccttatctgagtctgataagattagcaattaag |
10291105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 10265553 - 10265609
Alignment:
| Q |
16 |
cgattaagtccaatatgataccttattagagtctgataagattaacaattaagtgca |
72 |
Q |
| |
|
|||||||||||||||||||| | || ||||||||||||||||| |||||||||||| |
|
|
| T |
10265553 |
cgattaagtccaatatgatatttcatcagagtctgataagattagcaattaagtgca |
10265609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 10291288 - 10291234
Alignment:
| Q |
18 |
attaagtccaatatgataccttattagagtctgataagattaacaattaagtgca |
72 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
10291288 |
attaagtccaatctgatatttcattagagtctgataagattagcaattaagtgca |
10291234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 16321520 - 16321453
Alignment:
| Q |
2 |
aggtttgcaagctccgattaagtccaatatgataccttattagagtctgataagattaacaattaagt |
69 |
Q |
| |
|
||||||| ||||||| ||||||||| | ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
16321520 |
aggtttgtaagctccaattaagtcccttctgataccttatcagagtctgataaaattaacaattaagt |
16321453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University