View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_79 (Length: 269)
Name: NF1596_high_79
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_79 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 5822557 - 5822303
Alignment:
| Q |
1 |
tcacaggatattgcgttagcaccagcatctgcacctacacctatttctgagatttcaaaggaaaatgagttatcactgaaacgtatcttctgcaaggggt |
100 |
Q |
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| T |
5822557 |
tcacaggatattgcgttagcaccagcatctgcacctacacctatttctgagatttcaaaggaaaatgagttatcactgaaacgtatcttctgcaaggggt |
5822458 |
T |
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| Q |
101 |
taaataacactctcccatcagtctctagcatatgtggtcaaagtccttgagaaatgattgaaaggtggagatttcaactggacttcatatcgtaaaacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| ||||||||| |
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| T |
5822457 |
taaataacactctcccatcagtctctagcatatgtggtcaaagtccttgagaaatgaatgaatggtggagatttcaaatggacttcatatagtaaaacaa |
5822358 |
T |
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| Q |
201 |
cttaatccgtaaaaagac-ttttctataagaaataagcatcaactttgtataaat |
254 |
Q |
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|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5822357 |
cttaatccataaaaagactttttctataagaaataagcatcaactttgtataaat |
5822303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5829332 - 5829368
Alignment:
| Q |
1 |
tcacaggatattgcgttagcaccagcatctgcaccta |
37 |
Q |
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||||||||||||||||||||||| ||| ||||||||| |
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| T |
5829332 |
tcacaggatattgcgttagcacctgcagctgcaccta |
5829368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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