View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_85 (Length: 257)
Name: NF1596_high_85
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_85 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 65 - 240
Target Start/End: Complemental strand, 3313972 - 3313797
Alignment:
| Q |
65 |
cataaatcaatgttttaaaaaagttgaacaaattaatggaagctacacttttaaccagttgaacaatctagttcgattcaattgtaataaagaatatata |
164 |
Q |
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| T |
3313972 |
cataaatcaatgttttaaaaaagttgaacaaattaatggaagctacacttttaaccatttgaacaatctagttcgattcaattgtaataaagaatatata |
3313873 |
T |
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| Q |
165 |
ctaatcaaacaatgaactaggtgtatttaccattcttgtcaggaaggactaatgatacaagtgtagcaccccagtt |
240 |
Q |
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| T |
3313872 |
ctaatcaaacaatgaactaggtgtatttaccatttttgtcaggaaggactaatgatacaagtgtagcaccccagtt |
3313797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 3320559 - 3320504
Alignment:
| Q |
185 |
gtgtatttaccattcttgtcaggaaggactaatgatacaagtgtagcaccccagtt |
240 |
Q |
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| T |
3320559 |
gtgtatttaccatttttgtcaggaaggactaatgatacaagtgtagcaccccagtt |
3320504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 3314039 - 3313995
Alignment:
| Q |
13 |
aatatcacctaagtttcctgagacaaattaaaccatataatgtat |
57 |
Q |
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| T |
3314039 |
aatatcacctaagtttcctgagacaaattaaaccatataatgtat |
3313995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 3320852 - 3320814
Alignment:
| Q |
13 |
aatatcacctaagtttcctgagacaaattaaaccatata |
51 |
Q |
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| T |
3320852 |
aatatcacctaattttcctgagacaaattaaatcatata |
3320814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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