View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_87 (Length: 253)
Name: NF1596_high_87
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_87 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7669995 - 7670246
Alignment:
| Q |
1 |
ccaattccctctttcatctccttgatctctctcacaatactcttgaaaggcattatgtatgactagaaatctagcatagccattgtgtttgaaaagaaga |
100 |
Q |
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| T |
7669995 |
ccaattccctctttcatctccttgatctctctcacaatactcttgaaaggcattatgtatgactagaaatctagcatagccattgtgtttgaaaagaaga |
7670094 |
T |
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| Q |
101 |
aattagacttcatgttttttatgaaagcatacaaaacaatataacattttttcctaagtgcaatgtatttagtatattaacaatgatggaatgataacat |
200 |
Q |
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| T |
7670095 |
aattagacttcatgttttttatgaaagcatacaaaacaatataacattttttcctaagtgcaatgtatttagtatattaacaatgatggaatgagaacat |
7670194 |
T |
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| Q |
201 |
atattgcagagaaaaccatggaaaaataactctaccaccgtctcttgatatt |
252 |
Q |
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| T |
7670195 |
atattgcagagaaaaccatggaaaaataactctaccaccgtctcttgatatt |
7670246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 54 - 216
Target Start/End: Original strand, 7090248 - 7090410
Alignment:
| Q |
54 |
tatgtatgactagaaatctagcatagccattgtgtttgaaaagaagaaattagacttcatgttttttatgaaagcatacaaaacaatataacattttttc |
153 |
Q |
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| T |
7090248 |
tatgtaggactagaaatctagcatagccattgtgtttgaaaagaagaaattaggcttcttgttttttatgaaagcatacaaaacaatataacatttttgc |
7090347 |
T |
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| Q |
154 |
ctaagtgcaatgtatttagtatattaacaatgatggaatgataacatatattgcagagaaaac |
216 |
Q |
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| T |
7090348 |
ctaagttcaatgtatttagtgtattaacaatgatggaatgagaacatatattgcagagaaaac |
7090410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 7090177 - 7090233
Alignment:
| Q |
1 |
ccaattccctctttcatctccttgatctctctcacaatactcttgaaaggcattatg |
57 |
Q |
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||||||||||||||||||||||||| |||| | |||||||||||||| ||||||||| |
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| T |
7090177 |
ccaattccctctttcatctccttgagctcttttacaatactcttgaatggcattatg |
7090233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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