View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_9 (Length: 554)
Name: NF1596_high_9
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 166 - 536
Target Start/End: Original strand, 8446222 - 8446587
Alignment:
| Q |
166 |
tccctgtaatttacaaaaattagatactttagtctcttatgttcgtacccctagaaatccactttagattatattatattagtttttatgccaaaggaat |
265 |
Q |
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| T |
8446222 |
tccctgtaatttacaaaaattagatactttagtctcttatgttcgtacccctagaaatccactttagattagattatattagtttttatgccaaaggaat |
8446321 |
T |
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| Q |
266 |
agctagtgtgccataatttagcttcctagatcactagaggccaagtgacatttttcaagataatcaaaatttagaatcaaagcttaacaatttagcatcc |
365 |
Q |
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| T |
8446322 |
agctagtgtgccataatttagcttcctagatcactggagg-----tgacatttttcaagataatcaaaatttagaatcaaagcttaacaatttagcatcc |
8446416 |
T |
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| Q |
366 |
tagatcactcgaatcaaaatgttcatcatacaaataaagaaaaggagccatgtcaacaatcacgatagaaagtgaaaaatattataaaatgcatagaaag |
465 |
Q |
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| T |
8446417 |
taaatcactcgaatcaaaatgttcatcatacaaataaagaaaaggagccatgtcaacaatcacgatagaaattgaaaaatattataaaatgcatagaaag |
8446516 |
T |
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| Q |
466 |
catagtactggtcgttattaatctgctgatctaacgtctatgagtgcgggggtaaaaggaaatgggacttg |
536 |
Q |
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| T |
8446517 |
catagtactggtcgttattaatctgctgatctaacgtctatgagtgcgggggtaaaaggaaatgggacttg |
8446587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 162
Target Start/End: Original strand, 8446045 - 8446141
Alignment:
| Q |
66 |
aatccacaataaaaacaaaatcaaaacgagacctggaagaaaacaattgatgtattacaaaaggaaaaagttacagacaaaaattagaacaatagag |
162 |
Q |
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| T |
8446045 |
aatccacaatagaaacaagatcaaagggagacggggaagaaaacagttgagggattacaaagggaaagagttagggacaaagattagaacaatagag |
8446141 |
T |
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