View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_high_90 (Length: 250)
Name: NF1596_high_90
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_90 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 32664378 - 32664536
Alignment:
| Q |
18 |
ataattgtgttgttgtggtgtctcttttctttgattcatacactcttagtttctatctaatccaataaagttgaacaaaaaatttccaaccttccctatt |
117 |
Q |
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|||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32664378 |
ataattgtgttgttgtggcgtctcttttctt-gattcgtacactcttagtttctatctaatccaataaagttgtacaaaaaatttccaaccttccctatt |
32664476 |
T |
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| Q |
118 |
caattgcttcatttttcagcttccatacatttgtgagataacaaatgtcaatgttatcat |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32664477 |
caattgcttcatttttcagcttccatacatttgtgagataacaaatgtcaatgttatcat |
32664536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 9082791 - 9082633
Alignment:
| Q |
18 |
ataattgtgttgttgtggtgtctcttttctttgattcatacactcttagtttctatctaatccaataaagttgaacaaaaaatttccaaccttccctatt |
117 |
Q |
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|||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9082791 |
ataattgtgttgttgtggcgtctcttttctt-gattcatacactcttagtttcgatctaatccaataaagttgtacaaaaaatttccaaccttccctatt |
9082693 |
T |
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| Q |
118 |
caattgcttcatttttcagcttccatacatttgtgagataacaaatgtcaatgttatcat |
177 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9082692 |
caattgattcatttttcagcttctatacatttgtgagataacaaatgtcaatgttatcat |
9082633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 9082280 - 9082240
Alignment:
| Q |
197 |
tttctaattcaagtattatgtttggtcttcatatatttatt |
237 |
Q |
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| T |
9082280 |
tttctaattcaagtattatgtttggtcttcatatatttatt |
9082240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 32664893 - 32664932
Alignment:
| Q |
197 |
tttctaattcaagtattatgtttggtcttcatatatttat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
32664893 |
tttctaattcaagtattatgtttggtcttcatatatttat |
32664932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 6413995 - 6413837
Alignment:
| Q |
18 |
ataattgtgttgttgtggtgtctcttttctttgattcatacactcttagtttctatctaatccaataaagttgaacaaaaaatttccaaccttccctatt |
117 |
Q |
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|
|||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6413995 |
ataattgtgttgttgtggcgtctcttttctt-gattcatacactcttagtttcgatctaatccaataaagttgtacaaaaaatttccaaccttccctatt |
6413897 |
T |
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| Q |
118 |
caattgcttcatttttcagcttccatacatttgtgagataacaaatgtcaatgttatcat |
177 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
6413896 |
caattgattcatttttcagcttctatacatttgtgagataacaaatgtcaatgttatcat |
6413837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 236
Target Start/End: Complemental strand, 6413479 - 6413440
Alignment:
| Q |
197 |
tttctaattcaagtattatgtttggtcttcatatatttat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
6413479 |
tttctaattcaagtattatgtttggtcttcatatatttat |
6413440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 163
Target Start/End: Complemental strand, 26297234 - 26297179
Alignment:
| Q |
108 |
cttccctattcaattgcttcatttttcagcttccatacatttgtgagataacaaat |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26297234 |
cttccctattcaattgcttcatttttcagcttccatacatttgtgagataacaaat |
26297179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 26292246 - 26292206
Alignment:
| Q |
197 |
tttctaattcaagtattatgtttggtcttcatatatttatt |
237 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26292246 |
tttctaattcaagtattatgtttggtcatcatatatttatt |
26292206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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