View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1596_high_97 (Length: 248)
Name: NF1596_high_97
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_high_97 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 9973838 - 9973620
Alignment:
| Q |
11 |
tccaagaatatcaacattgtggaaagagtgaaaacgaccaagataatgttaatgagcattataagaattcaagataagataattgagtagtgcacaccaa |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9973838 |
tccaataatatcaacattgtggaaagagtgaaaacgaccaagataatgttaatgagtattataagaattcaagataagataattgagtagagcacaccaa |
9973739 |
T |
|
| Q |
111 |
gaagtatggccaaaaccaaaaatggtaacttgccagcacaagcattgctaataaatcttttatatttttgttctttctgtatctcagtatgatacattac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9973738 |
gaagtatggccaaaaccaaaaatggtaacttgccagcacaagcattgctaataaatcttttatatttttgttctttctgtatctcagtatgatacattac |
9973639 |
T |
|
| Q |
211 |
ttctagtagatgttccaac |
229 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
9973638 |
ttctagtagatgttccaac |
9973620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University