View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_102 (Length: 248)
Name: NF1596_low_102
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_102 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 13282990 - 13283220
Alignment:
| Q |
1 |
ctttcccatgtgtgccaagatgttaggtgcgatatacatcattaatatttttatagatacaaatgttagtatattagtcgttatgtcagtattttattct |
100 |
Q |
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| T |
13282990 |
ctttcccatgtgtgccaagatgttaggtgcgatatacatcattaatatttttatagatacaaatgttagtatattagtcgttatgtcactattttgttct |
13283089 |
T |
|
| Q |
101 |
tcactagagttttatactcgatgtttcatccttcaaccgagctcgtatcacttgagttactcaattcttgttttacattacttcattctgtatgcatctt |
200 |
Q |
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| T |
13283090 |
tcactagagttttatactcgatgtttcatccttcaaccgagctcgtatcacttgagttactcaattcttgttttacattacttgattctgtatgcatctt |
13283189 |
T |
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| Q |
201 |
tatatattttgaagtataatatggagttatg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
13283190 |
tatatattttgaagtataatatggagttatg |
13283220 |
T |
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Back To:
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 26533892 - 26533843
Alignment:
| Q |
46 |
tatttttatagatacaaatgttagtatattagtcgttatgtcagtatttt |
95 |
Q |
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||||||| || || ||||||||||||||||||| ||||||| |||||||| |
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| T |
26533892 |
tatttttttatatccaaatgttagtatattagttgttatgttagtatttt |
26533843 |
T |
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