View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1596_low_104 (Length: 247)
Name: NF1596_low_104
Description: NF1596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1596_low_104 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16770522 - 16770284
Alignment:
| Q |
1 |
tttctactatcattatcgttgtatttggattgattggatcatctctgcacataggttctaaatcaaatctttatatacttactttgtttaattttgttgt |
100 |
Q |
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| T |
16770522 |
tttctactatcattaccgttgtatttggattgattggatcatctctgcacataggttctaaatcaaatctttatatacttcgtttgtttatttttgttgt |
16770423 |
T |
|
| Q |
101 |
cannnnnnnngttcaatacacaacaagtgtaaactttgtcaaaaccctatgatcatcttcaatagaagggtctcttattaaggagaattaatttcgggta |
200 |
Q |
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| T |
16770422 |
catttttcttgttcaatacacaacaagtgtaaactttgtcaaaaccctatgatcatcttcaatagaagggtctcttattaaggagaattaatttcgggta |
16770323 |
T |
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| Q |
201 |
cctaatgagcacaaggtctcaaatagataccatctctct |
239 |
Q |
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| T |
16770322 |
cctaatgagcacaaggtctcaaataggtaccatctctct |
16770284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 16777305 - 16777131
Alignment:
| Q |
1 |
tttctactatcattatcgttgtatttggattgattggatcatctctgcacataggttctaaatcaaatctttatatacttactttgtttaattttgttgt |
100 |
Q |
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|||||||| |||||| | |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| ||| || ||| ||| ||||||||| |
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| T |
16777305 |
tttctactctcattaccattgtatttggattgattggatcatctatgcacataggctctaaatcaaatatttatttacgtagattgcttagttttgttgt |
16777206 |
T |
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| Q |
101 |
cannnnnnnngttcaatacacaacaagtgtaaactttgtcaaaaccctatgatcatcttcaatagaagggtctct |
175 |
Q |
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| T |
16777205 |
catttttcttgttgaatacacaacacgtgtaaactttgtcaaaaccctaagaccattttcaatgaaagggtctct |
16777131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 16777097 - 16777037
Alignment:
| Q |
177 |
attaaggagaattaatttcgggtacctaatgagcacaaggtctcaaatagataccatctct |
237 |
Q |
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||||||||||||||||||| |||| ||| | ||||||||||||||||| || ||||||| |
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| T |
16777097 |
attaaggagaattaatttcaattacccaataaacacaaggtctcaaataggtatcatctct |
16777037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 30889072 - 30889104
Alignment:
| Q |
199 |
tacctaatgagcacaaggtctcaaatagatacc |
231 |
Q |
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| T |
30889072 |
tacctaatgagcacaagggctcaaatagatacc |
30889104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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